rvandewater / YAIBLinks
π§ͺYet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109
β72Updated this week
Alternatives and similar repositories for YAIB
Users that are interested in YAIB are comparing it to the libraries listed below
Sorting:
- Repository for the HiRID ICU Benchmark (HiB) projectβ57Updated last year
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicatβ¦β123Updated 2 years ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.β83Updated 2 years ago
- β72Updated 3 months ago
- circEWS public codeβ69Updated 7 months ago
- source codes based on PyTorch to analyze EHRβ140Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standardβ31Updated 2 weeks ago
- A customizable pipeline for data extraction from MIMIC-IV.β235Updated last year
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β94Updated last year
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139β24Updated 2 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims dataβ62Updated last month
- Code for BEHRT: Transformer for Electronic Health Recordsβ111Updated 2 years ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streamsβ33Updated 2 weeks ago
- OMOP standardization pipeline for ICU databasesβ42Updated 4 months ago
- Training HuggingFace models on EHR dataβ26Updated 3 weeks ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health recordβ¦β144Updated this week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasksβ35Updated last month
- β21Updated 2 weeks ago
- Patient Code & Text Representation Learningβ20Updated 2 years ago
- TemporAI: ML-centric Toolkit for Medical Time Seriesβ117Updated last year
- β39Updated last year
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Predictionβ33Updated 2 years ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Healthβ26Updated 3 weeks ago
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care β¦β78Updated 2 months ago
- β13Updated 3 years ago
- β34Updated 2 years ago
- A simple set of MEDS polars-based ETL and transformation functionsβ33Updated 2 weeks ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex internβ¦β113Updated 3 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916β178Updated 5 months ago
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.β150Updated 3 months ago