rvandewater / YAIB
π§ͺYet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109
β65Updated 3 weeks ago
Alternatives and similar repositories for YAIB:
Users that are interested in YAIB are comparing it to the libraries listed below
- Repository for the HiRID ICU Benchmark (HiB) projectβ52Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.β78Updated 2 years ago
- β65Updated 2 weeks ago
- Code for BEHRT: Transformer for Electronic Health Recordsβ109Updated last year
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicatβ¦β115Updated last year
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Predictionβ31Updated 2 years ago
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β92Updated 9 months ago
- source codes based on PyTorch to analyze EHRβ135Updated last year
- OMOP standardization pipeline for ICU databasesβ39Updated last month
- circEWS public codeβ67Updated 4 months ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139β24Updated 2 years ago
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care β¦β77Updated last year
- A customizable pipeline for data extraction from MIMIC-IV.β210Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health recordβ¦β134Updated this week
- A simple set of MEDS polars-based ETL and transformation functionsβ29Updated 2 weeks ago
- Patient Code & Text Representation Learningβ20Updated last year
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916β171Updated 2 months ago
- β33Updated last year
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims dataβ48Updated last week
- Taking off-the-shelf HuggingFace models and training them on EHR dataβ15Updated 2 weeks ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasksβ36Updated this week
- Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.β14Updated last year
- β12Updated 3 years ago
- A collection of ETLs from common data formats to Medical Event Data Standardβ27Updated 2 weeks ago
- β29Updated 2 years ago
- Replication of the arterial line study in MIMIC-IVβ70Updated 3 years ago
- β31Updated last year
- TemporAI: ML-centric Toolkit for Medical Time Seriesβ111Updated last year
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streamsβ30Updated this week
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Healthβ24Updated last week