healthylaife / MIMIC-IV-Data-PipelineLinks
A customizable pipeline for multimodal data extraction from MIMIC-IV!
β291Updated last week
Alternatives and similar repositories for MIMIC-IV-Data-Pipeline
Users that are interested in MIMIC-IV-Data-Pipeline are comparing it to the libraries listed below
Sorting:
- π§ͺYet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom dataseβ¦β90Updated last month
- β83Updated 10 months ago
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-IIIβ465Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.β88Updated 3 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicatβ¦β140Updated 4 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims dataβ96Updated 2 months ago
- Code and website related to the eICU Collaborative Research Databaseβ372Updated last year
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916β195Updated last week
- Repository for the HiRID ICU Benchmark (HiB) projectβ58Updated 2 years ago
- Code for BEHRT: Transformer for Electronic Health Recordsβ119Updated 2 years ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-codeβ291Updated 4 years ago
- source codes based on PyTorch to analyze EHRβ149Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health recordβ¦β161Updated last month
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streamsβ39Updated 3 months ago
- OMOP standardization pipeline for ICU databasesβ45Updated 10 months ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)β209Updated 7 months ago
- circEWS public codeβ74Updated last year
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β99Updated 6 months ago
- β37Updated 3 months ago
- β31Updated 3 years ago
- Patient Code & Text Representation Learningβ19Updated 2 years ago
- Evaluation of the Sepsis-3 guidelines in MIMIC-IIIβ198Updated 3 years ago
- A simple set of MEDS polars-based ETL and transformation functionsβ39Updated last month
- β46Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR dataβ312Updated last year
- Sepsis cohort from MIMIC datasetβ125Updated 2 years ago
- Replication of the arterial line study in MIMIC-IVβ75Updated 4 years ago
- β27Updated 7 months ago
- A collection of ETLs from common data formats to Medical Event Data Standardβ37Updated 5 months ago
- Training HuggingFace models on EHR dataβ38Updated 2 months ago