Alternatives and similar repositories for TransformEHR

Users that are interested in TransformEHR are comparing it to the libraries listed below

• ipolharvard / ethos-paper
  ☆80Updated 8 months ago
• som-shahlab / hf_ehr
  Training HuggingFace models on EHR data
  ☆34Updated last month
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆147Updated last year
• weimin17 / Multimodal_Transformer
  A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction
  ☆36Updated 3 years ago
• lrsoenksen / HAIM
  This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…
  ☆140Updated 3 months ago
• paulhager / MIMIC-Clinical-Decision-Making-Dataset
  Code repository to create the MIMIC-CDM Dataset.
  ☆40Updated 9 months ago
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆42Updated 2 months ago
• XZhang97666 / MultimodalMIMIC
  ☆38Updated 2 years ago
• rvandewater / YAIB
  🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…
  ☆85Updated 2 weeks ago
• nliulab / mimic4ed-benchmark
  Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.
  ☆87Updated 3 years ago
• paulhager / MIMIC-Clinical-Decision-Making-Framework
  Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.
  ☆45Updated 9 months ago
• btheodorou99 / HALO_Inpatient
  ☆30Updated 10 months ago
• ratschlab / HIRID-ICU-Benchmark
  Repository for the HiRID ICU Benchmark (HiB) project
  ☆59Updated 2 years ago
• ratschlab / circEWS
  circEWS public code
  ☆74Updated last year
• nyuolab / NYUTron
  public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
  ☆119Updated 2 years ago
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆159Updated this week
• justin13601 / ACES
  [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams
  ☆38Updated 2 months ago
• paulhager / MIMIC-Clinical-Decision-Making-Analysis
  Code repository to analyse the performance and results of selected LLMs using the MIMIC CDM dataset.
  ☆21Updated 9 months ago
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆118Updated 2 years ago
• yy6linda / synthetic-ehr-benchmarking
  ☆31Updated 3 years ago
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆66Updated 5 months ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆48Updated last year
• healthylaife / MIMIC-IV-Data-Pipeline
  A customizable pipeline for data extraction from MIMIC-IV; now multimodal!
  ☆284Updated 3 weeks ago
• RyanWangZf / PyTrial
  PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development
  ☆117Updated last year
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆202Updated 6 months ago
• soda-inria / causal_ehr_mimic
  Code repository for the paper : Causal thinking for decision making on Electronic Health Records: why and how
  ☆20Updated 2 years ago
• The-Real-JerryChen / TRANS
  Official implementation for paper "Predictive Modeling with Temporal Graphical Representation on Electronic Health Records"
  ☆23Updated last year
• mmcdermott / EventStreamGPT
  Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…
  ☆116Updated 5 months ago
• ritaranx / RAM-EHR
  [ACL 2024] This is the code for our paper ”RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records“.
  ☆39Updated last year
• AI4HealthUOL / MDS-ED
  Repository for the paper 'MDS-ED: Multimodal Decision Support in the Emergency Department – a benchmark dataset based on MIMIC-IV'.
  ☆20Updated 7 months ago