CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
☆49Dec 9, 2025Updated 9 months ago
Alternatives and similar repositories for cehrbert
Users that are interested in cehrbert are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆43Aug 20, 2026Updated last month
- ☆30Jun 8, 2025Updated last year
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆48Sep 4, 2026Updated 3 weeks ago
- An interpretable foundation model of the patient clinical timeline: event forecasting, calibrated time-to-event alerts, and concept-level…☆61Updated this week
- A simple set of MEDS polars-based ETL and transformation functions☆42Aug 5, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19May 5, 2026Updated 4 months ago
- ☆14Feb 12, 2025Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆43Aug 5, 2025Updated last year
- Training HuggingFace models on EHR data☆53Nov 2, 2025Updated 10 months ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆182Aug 31, 2026Updated 3 weeks ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆19Mar 8, 2023Updated 3 years ago
- A high-performance database and Python reader interface for MEDS datasets☆22Aug 12, 2026Updated last month
- ☆20Updated this week
- The MIMIC-IV MEDS ETL☆25Aug 10, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆20Apr 14, 2026Updated 5 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆136Jun 12, 2026Updated 3 months ago
- PyTorch extension for handling deeply nested sequences of variable length☆15Sep 9, 2026Updated 2 weeks ago
- ☆11Sep 6, 2019Updated 7 years ago
- Tutorial repository for the official MOTOR release☆15Feb 22, 2025Updated last year
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Jun 18, 2024Updated 2 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆131Apr 6, 2023Updated 3 years ago
- ☆96Mar 8, 2025Updated last year
- ☆17Sep 11, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Prompting Large Language Models for Zero-Shot Clinical Prediction with Structured Longitudinal Electronic Health Record Data☆29Jan 17, 2024Updated 2 years ago
- The MOLGENIS Software generator tool for creating Dynamic Software Infrastructure used in the Life Sciences☆19Sep 5, 2013Updated 13 years ago
- Self-supervised graph learning with hyperbolic embedding for temporal health event prediction (IEEE Cybernetics)☆15Oct 31, 2020Updated 5 years ago
- ☆11Nov 3, 2023Updated 2 years ago
- ☆63Oct 2, 2025Updated 11 months ago
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Records☆61Jul 17, 2026Updated 2 months ago
- A Benchmark of Identifying and Clarifying Ambiguous Information Needs in Large Language Models☆23Jun 2, 2024Updated 2 years ago
- BEHRT: Transformer for Electronic Health Recrods☆12May 11, 2020Updated 6 years ago
- ☆12Nov 14, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆234Jun 6, 2025Updated last year
- A program that detects sentences in passive voice in English.☆12Dec 22, 2017Updated 8 years ago
- ☆15Feb 28, 2023Updated 3 years ago
- Code for creating cell-type-specific regulatory element annotation files☆21Jun 11, 2024Updated 2 years ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆117Jul 2, 2025Updated last year
- ☆16Sep 6, 2022Updated 4 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆331Feb 19, 2024Updated 2 years ago