Alternatives and similar repositories for cehrbert

Users that are interested in cehrbert are comparing it to the libraries listed below

• som-shahlab / hf_ehr
  Training HuggingFace models on EHR data
  ☆38Updated 2 months ago
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆96Updated 2 months ago
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆70Updated 6 months ago
• whaleloops / TransformEHR
  ☆46Updated 2 years ago
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆119Updated 2 years ago
• Medical-Event-Data-Standard / MEDS-DEV
  The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health
  ☆35Updated last month
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆148Updated last year
• mmcdermott / MEDS_transforms
  A simple set of MEDS polars-based ETL and transformation functions
  ☆39Updated last month
• justin13601 / ACES
  [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams
  ☆39Updated 3 months ago
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆161Updated last month
• ipolharvard / ethos-paper
  ☆83Updated 10 months ago
• Medical-Event-Data-Standard / meds_etl
  A collection of ETLs from common data formats to Medical Event Data Standard
  ☆37Updated 5 months ago
• mmcdermott / EventStreamGPT
  Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…
  ☆116Updated 6 months ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆99Updated 6 months ago
• nliulab / mimic4ed-benchmark
  Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.
  ☆88Updated 3 years ago
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆209Updated 7 months ago
• lrsoenksen / HAIM
  This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…
  ☆140Updated 4 months ago
• rvandewater / YAIB
  🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…
  ☆89Updated last month
• weimin17 / Multimodal_Transformer
  A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction
  ☆36Updated 3 years ago
• nyuolab / NYUTron
  public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
  ☆121Updated 2 years ago
• yy6linda / synthetic-ehr-benchmarking
  ☆31Updated 3 years ago
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 5 years ago
• mmcdermott / MIMICIV_FMs_public
  Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.
  ☆17Updated 2 years ago
• sajaddarabi / TAPER-EHR
  Patient Code & Text Representation Learning
  ☆19Updated 2 years ago
• RyanWangZf / PyTrial
  PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development
  ☆117Updated 2 years ago
• nrodemund / sicdb
  ☆18Updated 3 weeks ago
• AtlasCUMC / ICD10-ICD9-codes-conversion
  ☆41Updated last year
• vanderschaarlab / temporai
  TemporAI: ML-centric Toolkit for Medical Time Series
  ☆126Updated 2 years ago
• VectorInstitute / odyssey
  A toolkit for developing foundation models using Electronic Health Record (EHR) data.
  ☆48Updated 3 weeks ago
• landiisotta / convae_architecture
  ☆40Updated 3 years ago