Official code for "Integration of pre-trained protein language models into geometric deep learning networks"
☆23Jun 14, 2025Updated last year
Alternatives and similar repositories for GGNN_Meets_PLM
Users that are interested in GGNN_Meets_PLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jun 14, 2025Updated last year
- ☆12Jun 14, 2025Updated last year
- ☆28May 24, 2023Updated 3 years ago
- ☆41Jun 14, 2025Updated last year
- ☆19Jun 14, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆12Dec 2, 2024Updated last year
- ☆95Sep 7, 2022Updated 4 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆67Mar 4, 2024Updated 2 years ago
- Code for Molformer (AAAI 2023)☆96Jun 14, 2025Updated last year
- ☆13Jun 14, 2025Updated last year
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆330Nov 15, 2025Updated 11 months ago
- ☆67Jun 14, 2025Updated last year
- ☆32Sep 23, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- open source repository☆149Nov 30, 2023Updated 2 years ago
- The official code of Multi-player Nash Preference Optimization [ICLR 2026]☆35Feb 4, 2026Updated 9 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 3 years ago
- ☆41Mar 7, 2026Updated 8 months ago
- ☆66Apr 9, 2024Updated 2 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆93Dec 4, 2023Updated 2 years ago
- Multi-target protein binder design for specificity and cross-reactivity.☆23Sep 10, 2026Updated 2 months ago
- BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.6…☆23Nov 24, 2025Updated 11 months ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆164May 1, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆26Nov 6, 2024Updated 2 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆98Sep 29, 2026Updated last month
- Optimized version of the Reaction Decoder Tool (RDTool)☆17Sep 17, 2020Updated 6 years ago
- ☆52Aug 7, 2023Updated 3 years ago
- The Best Open Source LLM Code Interpreter☆17Sep 2, 2023Updated 3 years ago
- Reaction-Conditioned Virtual Screening of Enzymes☆50Jun 13, 2026Updated 5 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆191Apr 21, 2024Updated 2 years ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆331Jun 13, 2025Updated last year
- Deep Neural Virtual Screening (DENVIS)☆17Oct 3, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Jan 24, 2022Updated 4 years ago
- ATOM3D: tasks on molecules in three dimensions☆319Mar 2, 2023Updated 3 years ago
- Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms☆34Dec 8, 2023Updated 2 years ago
- Documentation for Rosetta Applications. The source for the Rosetta documentation wiki.☆11Nov 3, 2026Updated last week
- ☆54May 10, 2023Updated 3 years ago
- dMaSIF implementation for google colab☆36Mar 24, 2023Updated 3 years ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 3 years ago
Are these results useful?