phac-nml / galaxy_tools
Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML
☆15Updated last month
Alternatives and similar repositories for galaxy_tools:
Users that are interested in galaxy_tools are comparing it to the libraries listed below
- ☆13Updated 6 years ago
- An easy-to-use way for running Galaxy workflows.☆20Updated 5 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated last year
- Pipelines for processing malaria parasite and mosquito genome sequence data.☆14Updated 2 months ago
- reference free variant assembly☆32Updated last year
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆34Updated last week
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- ☆9Updated 7 years ago
- Kraken2 Server☆21Updated last year
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆14Updated 11 months ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆30Updated 6 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Galaxy tools and workflows developed at the Earlham Institute☆14Updated 10 months ago
- Awesome resources related to Galaxy project☆11Updated 2 months ago
- Systematic ProtEin AnnotatoR☆19Updated 3 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 4 months ago
- ☆19Updated 7 years ago
- rapidly rid reads of horrid humans☆15Updated 3 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 5 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago