shubhamchandak94 / LDPC_DNA_storageLinks
LDPC codes for Illumina sequencing-based DNA storage
☆9Updated 4 years ago
Alternatives and similar repositories for LDPC_DNA_storage
Users that are interested in LDPC_DNA_storage are comparing it to the libraries listed below
Sorting:
- A dataset of real DNA traces for benchmarking trace reconstruction algorithms☆18Updated 6 months ago
- Data for paper "Random Access in Large-Scale DNA Data Storage"☆12Updated 7 years ago
- DNA storage for nanopore sequencing using convolutional coding and basecaller-decoder integration☆21Updated 2 years ago
- An Efficient DNA Clustering algorithm based on Tree Structure.☆16Updated 2 years ago
- Python implementation of Varshamov-Tenengolts codes for correction of single insertion/deletion errors☆12Updated 4 years ago
- BGI DNA Storage Kit☆42Updated 4 months ago
- SPIDER-WEB generates coding algorithms with superior error tolerance and real-time information retrieval capacity☆10Updated 11 months ago
- Deep DNA Storage: Scalable and Robust DNA-based Storage via Coding Theory and Deep Learning☆12Updated 3 weeks ago
- DNA Archive Simulator (DNArSim) is a memory channel model that simulate the entire DNA Data Storage process: from synthesis to basecallin…☆8Updated 3 years ago
- Program designed for DNA storage using Yin-Yang transcoding algorithm☆28Updated last year
- Codec for DNA data storage able to correct substitutions, deletions, insertions and fragment loss with constraint adherence.☆15Updated 4 months ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆47Updated 2 months ago
- ☆61Updated 7 months ago
- Tokenizers and Machine Learning Models for biological sequence data☆25Updated 8 months ago
- Codon usage tables in code-friendly format + Python bindings☆37Updated 3 weeks ago
- 🧬 Analyzing compression algorithms for genomic sequencing data☆12Updated 5 years ago
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆121Updated 4 years ago
- This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.☆25Updated 2 years ago
- Learning to untangle genome assembly with graph neural networks.☆72Updated 6 months ago
- Error correction scheme for storing information on DNA☆12Updated 7 years ago
- Multi-Teacher Distillation for Protein embedding☆11Updated last year
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆156Updated 8 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆47Updated last month
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆17Updated 7 months ago
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆18Updated 6 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆38Updated 5 months ago
- General low-level API☆50Updated 2 years ago
- Protein structure alignment and search algorithm☆61Updated last week
- ☆58Updated 2 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago