dnbaker / bioseqLinks
Tokenizers and Machine Learning Models for biological sequence data
☆25Updated last year
Alternatives and similar repositories for bioseq
Users that are interested in bioseq are comparing it to the libraries listed below
Sorting:
- Learning to untangle genome assembly with graph neural networks.☆72Updated 11 months ago
- Plot multiple sequence alignment (MSA)☆15Updated last year
- The PanGenome Graph Builder☆16Updated last year
- Prediction of virus-host association using protein language models and multiple instance learning☆20Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆95Updated 4 months ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆48Updated last month
- Intel lab's open sourced data science framework for accelerating digital biology☆49Updated last month
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆16Updated 4 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16Updated last year
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Updated last year
- Modeling whole bacterial genome as a sequence of proteins.☆77Updated 2 weeks ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated 10 months ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 7 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated 2 months ago
- Application for semi-automated genomic annotation.☆16Updated 2 months ago
- Machine learning methods for DNA sequence analysis.☆56Updated 2 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆24Updated 5 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- Workflow for identifying and classifying homologous gene/protein sequences☆20Updated last month
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆64Updated this week
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆58Updated 2 months ago
- A tool for simulating random mutations in any genome☆42Updated last year
- Construct a Physical Map from Linked Reads☆18Updated last year
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆39Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆57Updated 8 months ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆19Updated 7 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago