dnbaker / bioseqLinks
Tokenizers and Machine Learning Models for biological sequence data
☆25Updated last year
Alternatives and similar repositories for bioseq
Users that are interested in bioseq are comparing it to the libraries listed below
Sorting:
- Learning to untangle genome assembly with graph neural networks.☆72Updated last year
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Updated 2 months ago
- Plot multiple sequence alignment (MSA)☆16Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆100Updated last week
- Intel lab's open sourced data science framework for accelerating digital biology☆49Updated last week
- Prediction of virus-host association using protein language models and multiple instance learning☆21Updated last year
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- ☆48Updated 5 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 3 years ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆61Updated 2 months ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Updated last year
- Machine learning methods for DNA sequence analysis.☆57Updated last week
- The PanGenome Graph Builder☆16Updated last year
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆15Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16Updated last year
- Modeling whole bacterial genome as a sequence of proteins.☆86Updated 3 weeks ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Updated 6 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Updated 8 months ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆39Updated 10 months ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- ☆26Updated 4 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Updated 4 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 7 months ago
- Diverse Genomic Embedding Benchmark☆50Updated 5 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Updated 2 years ago
- Deep learning embedding for nucleotide sequences☆19Updated 10 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Updated 11 months ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated last year