SymPortal is an analytical tool used to identify Symbiodiniaceae genotypes using Illumina rDNA ITS2 amplicon NGS data.
☆21Feb 12, 2024Updated 2 years ago
Alternatives and similar repositories for SymPortal_framework
Users that are interested in SymPortal_framework are comparing it to the libraries listed below
Sorting:
- Dendrograms for Evolutionary Analysis☆12Dec 9, 2019Updated 6 years ago
- Analysis with Profile Hidden Markov Models☆22Jan 23, 2026Updated last month
- Reproducible Reporting with R (R3) training materials for marine ecosystem indicators☆13Sep 7, 2021Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Dec 9, 2022Updated 3 years ago
- Biobakery formulae for the Homebrew package manager☆11Sep 9, 2019Updated 6 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 8 years ago
- A list of inspirational and thought-provoking reads about women who code.☆10Nov 20, 2025Updated 3 months ago
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 7 months ago
- ☆15Nov 7, 2014Updated 11 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- A provenance library for bioinformatics workflows 🧬 🔀 📝☆14Oct 5, 2021Updated 4 years ago
- Enabling research software engineers to add citability in open source software without hassle.☆10Feb 27, 2022Updated 4 years ago
- Python tools to process rowing (the sport) data☆14Sep 13, 2025Updated 5 months ago
- This repository will hold ideas and resources to support community building efforts by Carpentries community members as part of the Commu…☆12May 22, 2025Updated 9 months ago
- AODN Open Geospatial Portal☆20Mar 25, 2024Updated last year
- ☆11Mar 5, 2025Updated 11 months ago
- SSNbayes: An R package for Bayesian spatial and spatio-temporal analysis in stream network☆20Jul 25, 2025Updated 7 months ago
- Miscellaneous documents☆13Dec 3, 2025Updated 2 months ago
- A peptide string building for expanding chemical dataset combinations.☆12Dec 8, 2024Updated last year
- Analysis code for a manuscript on community similarity computation☆14Apr 3, 2019Updated 6 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- A Hierarchical Softmax Framework for PyTorch☆22Jul 10, 2025Updated 7 months ago
- A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.☆18Mar 9, 2015Updated 10 years ago
- Non-linear regression in R allowing multiple start parameters☆20Jan 9, 2025Updated last year
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 3 months ago
- An R-package allowing seamless extraction of river networks from Digital Elevation Models data☆17Feb 12, 2025Updated last year
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆85Updated this week
- ☆21Dec 30, 2025Updated 2 months ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- SSN2: Spatial Modeling on Stream Networks in R☆25Nov 13, 2025Updated 3 months ago
- Code Contributor Network Graph☆16Mar 3, 2021Updated 4 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Nov 1, 2019Updated 6 years ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Sep 15, 2024Updated last year
- ☆24Apr 17, 2025Updated 10 months ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆22Feb 15, 2023Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago