reefgenomics / SymPortal_framework
SymPortal is an analytical tool used to identify Symbiodiniaceae genotypes using Illumina rDNA ITS2 amplicon NGS data.
☆20Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for SymPortal_framework
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated 11 months ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆17Updated 5 months ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆79Updated last year
- FUNGuild: parsing OTUs into functional guilds☆106Updated 6 months ago
- ☆14Updated 10 years ago
- Various functions for analysis of microbial community data☆41Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆26Updated 4 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- JAMP - Just Another Metabarcoding Pipeline☆32Updated 2 years ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 7 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆13Updated last year
- Automatically exported from code.google.com/p/jmodeltest2☆75Updated 3 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 6 years ago
- Sydney Phylogenetics Workshop☆62Updated 4 months ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆31Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆69Updated 2 years ago
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- Using ggtree to build phylogenetic trees☆45Updated 2 weeks ago
- ☆69Updated 11 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆34Updated 4 months ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- Look Up Guild Information for Fungi in R☆18Updated last year
- A python package to query different databases of boldsystems.org☆30Updated 3 weeks ago
- ☆49Updated 3 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆68Updated 9 months ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆110Updated last week
- R scripts for performing co-occurrence analyses☆34Updated 9 years ago