Alternatives and similar repositories for SymPortal_framework

Users that are interested in SymPortal_framework are comparing it to the libraries listed below

• uit-metabarcoding / MJOLNIR
  MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
  ☆18Updated 5 months ago
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆128Updated last year
• DominikBuchner / BOLDigger
  A python package to query different databases of boldsystems.org
  ☆32Updated last year
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆169Updated 5 months ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆32Updated 7 years ago
• songweizhi / Tax4Fun2_short_tutorial
  A short tutorial for Tax4Fun2
  ☆24Updated last year
• rogotoh / PMiFish
  ☆13Updated last year
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆17Updated 6 months ago
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆92Updated 4 months ago
• RiceMicrobiome / Edwards-et-al.-2014
  ☆15Updated 11 years ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆180Updated last week
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆72Updated 2 years ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆39Updated 4 years ago
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆193Updated 11 months ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆176Updated last year
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆47Updated this week
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆91Updated 5 months ago
• pr2database / pr2database
  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
  ☆85Updated 2 months ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆142Updated 2 months ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆47Updated 4 months ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 3 months ago
• defleury / Schmidt_et_al_2016_community_similarity
  Analysis code for a manuscript on community similarity computation
  ☆14Updated 6 years ago
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆19Updated 5 years ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆265Updated this week
• Saskia-Oosterbroek / decona
  fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
  ☆50Updated 4 months ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆23Updated 10 months ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆137Updated last year
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆13Updated last year
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆33Updated last year
• yhwu / idemp
  Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
  ☆32Updated 8 years ago