Alternatives and similar repositories for aphid:

Users that are interested in aphid are comparing it to the libraries listed below

• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆26Updated 5 years ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 5 years ago
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆22Updated 2 years ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆54Updated 5 months ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆14Updated 6 years ago
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆31Updated last year
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆69Updated last year
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆28Updated 5 years ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆20Updated 11 months ago
• gosling-lang / grosling
  R interface to 'Gos'
  ☆37Updated last year
• statdivlab / tinyvamp
  ☆19Updated last year
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆13Updated 3 years ago
• csoneson / treeclimbR
  ☆20Updated 2 weeks ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year
• mikeblazanin / gcplyr
  gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
  ☆30Updated this week
• QTCAT / qtcat
  Quantitative Trait Cluster Association Test in R
  ☆25Updated 3 years ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 3 months ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆69Updated last month
• QuantGen / BEDMatrix
  A matrix-like wrapper around PLINK .bed files
  ☆18Updated 4 months ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 4 years ago
• BgeeDB / BgeeDB_R
  Source code of the R packge BgeeDB to use data from the Bgee database
  ☆15Updated 2 months ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆35Updated 9 years ago
• UBod / msa
  R package for multiple sequence alignment
  ☆17Updated 4 months ago
• gmbecker / genbankr
  ☆16Updated last year
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆21Updated 4 years ago
• reptalex / phylofactor
  ☆26Updated 10 months ago
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆50Updated last month
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆44Updated 6 months ago
• PennChopMicrobiomeProgram / ZIBR
  Zero-Inflated Beta Random Effect model
  ☆30Updated last year
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆11Updated last month