EthoML / VAMELinks
Variational Animal Motion Embedding - A tool for time series embedding and clustering
☆37Updated 2 months ago
Alternatives and similar repositories for VAME
Users that are interested in VAME are comparing it to the libraries listed below
Sorting:
- ☆115Updated 3 months ago
- a module for kinematic analysis of deeplabcut outputs☆146Updated last year
- ☆100Updated last month
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆197Updated last year
- An active learning platform for expert-guided, data efficient discovery of behavior.☆64Updated 5 months ago
- Quantify user-defined behaviors.☆101Updated 2 weeks ago
- R Scripts to analyze deep lab cut point data and related data☆70Updated 2 years ago
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆33Updated 5 months ago
- Code package that allows meta analyses of unsupervised behavior results☆19Updated 6 months ago
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆202Updated last year
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆61Updated 2 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 10 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆52Updated last year
- Ensembling and kalman smoothing for pose estimation☆29Updated 2 weeks ago
- Deep Imputation for Skeleton data☆23Updated last week
- ☆52Updated last year
- Demo code for CAPTURE and DANNCE☆29Updated 4 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 9 months ago
- SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.☆27Updated last year
- Various scripts to support deeplabcut and what to do afterwards!☆156Updated 5 months ago
- Python package for streaming video from multiple cameras to disk. Features real-time compression and debayering using FFmpeg.☆47Updated 2 weeks ago
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆35Updated 4 years ago
- Free, platform independent, behavior tracking software.☆143Updated 5 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 3 weeks ago
- Sample implementation of the MotionMapper behavioral analysis algorithms☆81Updated 5 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 4 months ago
- Histology processing☆71Updated 2 months ago
- a Python API to record video & system timestamps from Imaging Source USB cameras☆67Updated 2 years ago
- MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.☆38Updated last month