EthoML / VAME
Variational Animal Motion Embedding - A tool for time series embedding and clustering
☆25Updated this week
Alternatives and similar repositories for VAME:
Users that are interested in VAME are comparing it to the libraries listed below
- R Scripts to analyze deep lab cut point data and related data☆66Updated 2 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 7 months ago
- Code package that allows meta analyses of unsupervised behavior results☆16Updated 8 months ago
- Tools for machine learning of animal behavior☆14Updated last year
- ☆88Updated this week
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆29Updated 11 months ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆58Updated last week
- ☆19Updated last year
- Demo code for CAPTURE and DANNCE☆28Updated 3 years ago
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆47Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 3 months ago
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆33Updated 4 years ago
- Code for Functional Mixed Models for Fiber Photometry☆11Updated last month
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆55Updated last year
- SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.☆19Updated 6 months ago
- DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.☆25Updated last year
- MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.☆34Updated 3 months ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆50Updated 2 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆13Updated last month
- Multi-probe trajectory planning in an intuitive 3D environment☆52Updated 2 weeks ago
- Data processing tools for animal behavioural analysis☆17Updated this week
- Ensembling and kalman smoothing for pose estimation☆18Updated last week
- ☆51Updated 8 months ago
- Histology processing☆65Updated 2 weeks ago
- Browser-based NWB visualization and DANDI exploration☆57Updated this week
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆58Updated last week
- A package to manage electrophysiology analysis.☆22Updated last week
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- ☆19Updated 2 months ago
- ☆104Updated 3 months ago