Alternatives and similar repositories for moseq2-app

Users that are interested in moseq2-app are comparing it to the libraries listed below

• YttriLab / A-SOID
  An active learning platform for expert-guided, data efficient discovery of behavior.
  ☆62Updated 3 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• dattalab / keypoint-moseq
  ☆97Updated this week
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆105Updated last month
• ETHZ-INS / DLCAnalyzer
  R Scripts to analyze deep lab cut point data and related data
  ☆67Updated 2 years ago
• umyelab / LabGym
  Quantify user-defined behaviors.
  ☆94Updated 3 weeks ago
• LINCellularNeuroscience / VAME
  Variational Animal Motion Embedding - A tool for time series embedding and clustering
  ☆193Updated last year
• petersaj / AP_histology
  Histology processing
  ☆70Updated 3 weeks ago
• YttriLab / B-SOID
  Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…
  ☆201Updated last year
• PolarBean / DLC_ROI_tool
  A tool for drawing ROIs on videos and analysing deeplabcut videos.
  ☆35Updated 4 years ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆60Updated 2 years ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated last year
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆139Updated 3 months ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• bermanlabemory / motionmapperpy
  Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)
  ☆30Updated 3 months ago
• DeepLabCut / DLCutils
  Various scripts to support deeplabcut and what to do afterwards!
  ☆156Updated 3 months ago
• neuroethology / MARS
  End-user version of the Mouse Action Recognition System (MARS)
  ☆75Updated last year
• AdaptiveMotorControlLab / DLC2Kinematics
  a module for kinematic analysis of deeplabcut outputs
  ☆144Updated last year
• pyratlib / pyrat
  PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…
  ☆51Updated last year
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆57Updated 2 weeks ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 8 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆152Updated 2 weeks ago
• LernerLab / GuPPy
  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
  ☆78Updated 2 weeks ago
• mlfpm / deepof
  DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition
  ☆48Updated this week
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆46Updated 2 years ago
• JingyiGF / HERBS
  ☆19Updated last year
• ETHZ-INS / BehaviorFlow
  Code package that allows meta analyses of unsupervised behavior results
  ☆16Updated 4 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆76Updated last year