pyratlib / pyratLinks
PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming can perform animal behavior analysis more simpler.
☆52Updated last year
Alternatives and similar repositories for pyrat
Users that are interested in pyrat are comparing it to the libraries listed below
Sorting:
- Code package that allows meta analyses of unsupervised behavior results☆19Updated 5 months ago
- R Scripts to analyze deep lab cut point data and related data☆68Updated 2 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Quantify user-defined behaviors.☆98Updated 3 weeks ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆61Updated 2 years ago
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆35Updated 4 years ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆63Updated 5 months ago
- Free, platform independent, behavior tracking software.☆142Updated 5 months ago
- a module for kinematic analysis of deeplabcut outputs☆144Updated last year
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆202Updated last year
- ☆52Updated last year
- ☆97Updated 3 weeks ago
- a Python API to record video & system timestamps from Imaging Source USB cameras☆67Updated 2 years ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated last month
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆36Updated 2 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 9 months ago
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆51Updated this week
- ☆115Updated 3 months ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆195Updated last year
- ☆19Updated last year
- Fully automated (rodent) limb motion analysis toolbox for behavioral analysis with bodypart coordinate data, building upon markerless pos…☆15Updated 2 weeks ago
- Various scripts to support deeplabcut and what to do afterwards!☆156Updated 4 months ago
- ☆19Updated last year
- Histology processing☆71Updated 2 months ago
- Automatic Mobility Based Behavioral Quantification ( Forced Swim Test, Tail Suspension Test )☆18Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- Feeding Experimentation Device version 3☆31Updated last week
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 8 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year