Nextflow workshop materials November 2025
☆19Jun 9, 2026Updated 2 months ago
Alternatives and similar repositories for nextflow-reproducible-data-analysis
Users that are interested in nextflow-reproducible-data-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 4 months ago
- Generate beautiful API documentation for Nextflow pipelines☆18Updated this week
- nf-test utility functions☆12May 22, 2026Updated 2 months ago
- material related to the genetech courses☆10Sep 11, 2023Updated 2 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A nextflow pipeline for calling exome CNVs☆14Updated this week
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆70Updated this week
- Command line tool for Wave containers provisioning service☆19Jul 24, 2026Updated 2 weeks ago
- A manifesto for AI-assisted modernisation of bioinformatics software.☆53Jun 16, 2026Updated last month
- Metro-map-style SVG diagrams from Mermaid graph definitions, designed for visualizing bioinformatics pipeline workflows☆35Updated this week
- ☆21Feb 26, 2026Updated 5 months ago
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- MayaChemTools is a growing collection of Perl and Python scripts, modules, and classes to support a variety of day-to-day computational d…☆10Sep 1, 2020Updated 5 years ago
- A tutorial on how to annotate and interpret novel mammalian reference genomes☆29Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Workflow for qiime2 workshop☆16Apr 17, 2024Updated 2 years ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆24Jul 30, 2026Updated last week
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11Jul 29, 2026Updated last week
- gatk4 RNA variant calling pipeline☆61Jul 28, 2026Updated last week
- 🧑🏫 SIB course on using LLM for biodata exploration☆21Jun 3, 2026Updated 2 months ago
- Public repository for the biodata resource inventory performed in 2022.☆11Nov 25, 2025Updated 8 months ago
- ☆11Jan 20, 2022Updated 4 years ago
- ☆47Jun 10, 2026Updated 2 months ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆13Jul 16, 2026Updated 3 weeks ago
- ☆12May 22, 2024Updated 2 years ago
- CiteFuse:☆29Feb 7, 2023Updated 3 years ago
- Experimental features for Nextflow☆53Dec 30, 2025Updated 7 months ago
- Website about the project WorkflowHub☆13Aug 3, 2026Updated last week
- ☆14Feb 17, 2022Updated 4 years ago
- A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-…☆37Nov 25, 2024Updated last year
- A simple cv template written in LaTex☆12Aug 14, 2021Updated 4 years ago
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆63Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Mar 14, 2023Updated 3 years ago
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆53Apr 8, 2024Updated 2 years ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated 2 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- Phenotype detection in pooled genetic perturbation screens☆12Mar 13, 2024Updated 2 years ago
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago