The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
☆449Mar 30, 2026Updated last week
Alternatives and similar repositories for seqan3
Users that are interested in seqan3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SeqAn's official repository.☆500Mar 18, 2026Updated 3 weeks ago
- BioC++ core library (alphabet, meta, ranges)☆22Jul 21, 2023Updated 2 years ago
- Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.☆590May 13, 2025Updated 11 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆211Mar 18, 2026Updated 3 weeks ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pairwise Sequence Alignment Library☆277Aug 27, 2025Updated 7 months ago
- SIMD partial order alignment tool/library☆176Sep 21, 2025Updated 6 months ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Sep 16, 2025Updated 6 months ago
- This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementat…☆1,783Feb 23, 2026Updated last month
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆57Mar 4, 2024Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,153Feb 13, 2026Updated last month
- C library for high-throughput sequencing data formats☆913Apr 2, 2026Updated last week
- Code examples of fast and simple k-mer counters for tutorial purposes☆171Mar 10, 2020Updated 6 years ago
- LAMBDA – the Local Aligner for Massive Biological DatA☆83Aug 26, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 6 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆223Oct 23, 2025Updated 5 months ago
- ☆316Jan 15, 2026Updated 2 months ago
- C++ API & command-line toolkit for working with BAM data☆429May 18, 2025Updated 10 months ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- A tool for merging large BWTs☆24Nov 26, 2020Updated 5 years ago
- Long read / genome alignment software☆312Dec 16, 2025Updated 3 months ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- Assembled Genomes Compressor☆179Mar 26, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- The next version of bwa-mem☆826Oct 15, 2025Updated 5 months ago
- Incremental construction of FM-index for DNA sequences☆72Jun 12, 2024Updated last year
- Fast and frugal disk based k-mer counter☆328Mar 10, 2026Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆214Mar 20, 2026Updated 3 weeks ago
- C++ library for parsing several formats in bioinformatics☆10May 18, 2023Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated 3 months ago
- ☆286Dec 29, 2025Updated 3 months ago
- tools for working with genome variation graphs☆1,306Apr 6, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Fast and accurate set similarity estimation via containment min hash☆42Jul 19, 2024Updated last year
- A fast multi-threaded k-mer counter☆534Mar 20, 2024Updated 2 years ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆87Mar 24, 2026Updated 2 weeks ago
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆170May 28, 2024Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆563Jul 13, 2024Updated last year
- Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly☆226Updated this week
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Updated this week