BenLangmead / bowtieLinks
An ultrafast memory-efficient short read aligner
☆265Updated 3 years ago
Alternatives and similar repositories for bowtie
Users that are interested in bowtie are comparing it to the libraries listed below
Sorting:
- C++ API & command-line toolkit for working with BAM data☆429Updated 7 months ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆293Updated 2 months ago
- A fast multi-threaded k-mer counter☆526Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆499Updated last month
- ☆320Updated 5 years ago
- BEDOPS: high-performance genomic feature operations☆356Updated 8 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆336Updated 3 years ago
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 3 years ago
- Spliced read mapper for RNA-Seq☆92Updated 2 years ago
- Reads simulator☆283Updated 4 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆330Updated 7 months ago
- UCSC command line bioinformatic utilities☆187Updated last year
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆212Updated 5 years ago
- Strelka2 germline and somatic small variant caller☆389Updated 4 years ago
- de novo sequence assembler using string graphs☆243Updated 6 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆392Updated 4 months ago
- Assemble large genomes using short reads☆329Updated 9 months ago
- Haplotype VCF comparison tools☆454Updated 2 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆261Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆282Updated 4 months ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆262Updated 2 years ago
- ☆297Updated 2 weeks ago
- Data and analysis for NA12878 genome on nanopore☆396Updated 3 years ago
- Transcript assembly and quantification for RNA-Seq☆475Updated this week
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Updated 6 years ago
- Next generation sequencing reads de novo assembler.☆239Updated 3 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆858Updated 7 months ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆297Updated 3 months ago