seqan / flexbarLinks
flexible barcode and adapter removal
☆80Updated 2 years ago
Alternatives and similar repositories for flexbar
Users that are interested in flexbar are comparing it to the libraries listed below
Sorting:
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 8 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆152Updated last month
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- parallelized blat with multi-threads support☆53Updated 11 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 months ago
- NEAT read simulation tools☆101Updated 3 years ago
- My bioinfo toolbox☆50Updated 11 months ago
- ☆96Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated 3 weeks ago
- ABRA2☆95Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 4 months ago
- FEELnc : FlExible Extraction of LncRNA☆92Updated 5 months ago
- Platypus Variant Caller☆108Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆92Updated 2 weeks ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- ☆91Updated 3 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 8 years ago