flexible barcode and adapter removal
☆80Feb 10, 2023Updated 3 years ago
Alternatives and similar repositories for flexbar
Users that are interested in flexbar are comparing it to the libraries listed below
Sorting:
- ☆96Sep 21, 2022Updated 3 years ago
- ☆13Sep 5, 2017Updated 8 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆115Updated this week
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Dec 26, 2023Updated 2 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 6 months ago
- Galaxy RNA workbench☆41Oct 10, 2020Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Oct 7, 2022Updated 3 years ago
- full taxonomer cython repository☆22Dec 1, 2019Updated 6 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 5 years ago
- Tools for early stage alignment file processing☆95Mar 12, 2019Updated 6 years ago
- Multi-sample transcriptome assembly from RNA-Seq☆25Jun 10, 2018Updated 7 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆146Oct 4, 2016Updated 9 years ago
- NGS perl modules☆11Updated this week
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 7 months ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆158Dec 11, 2025Updated 2 months ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 5 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆213May 14, 2020Updated 5 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Oct 31, 2025Updated 4 months ago
- fastx-utils using klib☆20Sep 1, 2020Updated 5 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆68May 8, 2025Updated 9 months ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 3 weeks ago
- ☆12Jan 21, 2016Updated 10 years ago