bjcairns / ukbschemas
Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
☆20Updated 4 years ago
Alternatives and similar repositories for ukbschemas:
Users that are interested in ukbschemas are comparing it to the libraries listed below
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆24Updated 3 years ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 4 years ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆38Updated 3 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆34Updated 2 years ago
- Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch☆12Updated 3 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆49Updated 2 years ago
- ☆5Updated last week
- Prepare UK Biobank Electronic Health Record data for research☆26Updated 2 years ago
- R package for UK Biobank data wrangling.☆20Updated last year
- R package to streamline use of the AllofUs researcher workbench☆16Updated 2 weeks ago
- An R package to manipulate and explore UK Biobank data☆104Updated 2 years ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆48Updated 10 months ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆35Updated 5 months ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- Helper functions for UK Biobank data☆12Updated 3 years ago
- ☆31Updated 6 months ago
- Python scripts to extract and pre-process UKB data☆31Updated 5 years ago
- Pipeline for processing UK biobank data☆13Updated 4 years ago
- R package to easily interface with OMOP-formatted EHR data.☆35Updated 5 years ago
- Workbench demo project: cross-analysis of AoU and UKB.☆12Updated 2 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆28Updated 3 years ago
- The PheWAS R package☆141Updated 3 weeks ago
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆9Updated 4 years ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆26Updated last year
- Develop a function to be incorporated into the R package 'icd' that will convert International Classification of Diseases codes from Nint…☆20Updated 5 years ago
- GENetic Effect-Size distribution Inference from Summary-level data☆14Updated 4 years ago
- HDR UK National Phenotype Library☆22Updated 2 years ago
- Examples on using EpiGraphDB☆27Updated 4 years ago
- Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.☆27Updated 2 months ago
- Converting UK Biobank genome-wide genotyping data from one reference build to another☆18Updated 10 months ago