schostac / Genome-Assembly-Programming-ChallengeLinks
Genome Assembly, de Bruijn Graph, Overlap Graph, Bubbles and Tips Removal, Optimal K-mer, Phi X174 Genome, Error-Prone Reads, Universal Circular String, Eulerian Cycle.
☆22Updated last year
Alternatives and similar repositories for Genome-Assembly-Programming-Challenge
Users that are interested in Genome-Assembly-Programming-Challenge are comparing it to the libraries listed below
Sorting:
- Haplotype-aware assembly of complex regions and small genomes☆12Updated 2 months ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Updated 5 years ago
- Python3 Read Until API implementation☆11Updated 5 years ago
- My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/☆8Updated 2 years ago
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Updated 5 years ago
- ☆53Updated 4 years ago
- Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.☆8Updated 6 years ago
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆13Updated 2 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- ☆11Updated 3 years ago
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Updated 2 years ago
- NGS-1 Data analysis course☆37Updated 4 years ago
- ☆11Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆19Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Phylogenetic Network Inference without ILS☆18Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Updated 13 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- ☆32Updated last year
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 3 months ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 5 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery☆11Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- ☆26Updated 5 months ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago