Alternatives and similar repositories for Genome-Assembly-Programming-Challenge

Users that are interested in Genome-Assembly-Programming-Challenge are comparing it to the libraries listed below

• BessieChen / Coursera-Genome-Assembly-Programming-Challenge
  Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
  ☆8Updated 6 years ago
• NGSchoolEU / ngs19_python_intro
  Introduction to Python3
  ☆11Updated 4 years ago
• somme89 / rapidNJ
  Fast implementation of the Neighbour-Joining method for phylogenetic inference
  ☆16Updated 8 months ago
• SPAAM-community / intro-to-ancient-metagenomics-book
  Introduction to Ancient Metagenomics Book
  ☆12Updated this week
• Psy-Fer / interARTIC
  InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
  ☆31Updated last year
• ChnMasterOG / KmerGO
  KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…
  ☆13Updated 2 years ago
• cihga39871 / Atria
  An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
  ☆34Updated last month
• LooseLab / read_until_api_v2
  Python3 Read Until API implementation
  ☆11Updated 5 years ago
• Joseph7e / MDIBL-T3-WGS-Tutorial
  Bacterial Genome Assembly and Assessment
  ☆26Updated 5 months ago
• GenomicsAotearoa / RNA-seq-workshop
  ☆19Updated last year
• goldman-gp-ebi / BOSS-RUNS
  Dynamic, adaptive sampling during nanopore sequencing
  ☆32Updated last week
• bpucker / APPLS
  Applied Python Programming for Life Scientists
  ☆25Updated 4 years ago
• ndierckx / NOVOLoci
  Haplotype-aware assembly of complex regions and small genomes
  ☆11Updated last week
• AntonBankevich / LJA
  ☆116Updated last month
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆57Updated last year
• atmaivancevic / structuralVariantResources
  Open source tools and papers for structural variant analysis.
  ☆11Updated 6 years ago
• rrwick / Small-plasmid-Nanopore
  ☆11Updated 3 years ago
• jgans / thermonucleotideBLAST
  Searching DNA/RNA sequence databases with PCR and/or probe queries
  ☆20Updated 10 months ago
• xuwd11 / Coursera-Bioinformatics
  My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; …
  ☆92Updated 6 years ago
• makovalab-psu / NoiseCancellingRepeatFinder
  Noise-Cancelling Repeat Finder
  ☆25Updated 2 years ago
• dietvin / pod5Viewer
  GUI for inspecting POD5 files
  ☆28Updated 4 months ago
• drtamermansour / nu-ngs02
  ☆15Updated 2 years ago
• ksahlin / BESST
  BESST - scaffolder for genomic assemblies
  ☆58Updated last year
• niemasd / TreeCluster
  Efficient phylogenetic clustering of viral sequences
  ☆82Updated last year
• sidsriv / Algorithms-for-DNA-sequencing
  Codes from Coursera's course Algorithms for DNA sequencing, part of genomic data science specialization offered by Johns Hopkins Universi…
  ☆24Updated 8 years ago
• jodyphelan / tbdb
  Standard database for the TBProfiler tool
  ☆29Updated 2 months ago
• metagentools / VStrains
  VStrains is a de novo approach for reconstructing strains from viral quasispecies.
  ☆23Updated 3 months ago
• aleimba / bac-genomics-scripts
  Collection of scripts for bacterial genomics
  ☆45Updated 5 years ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆135Updated last year
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆78Updated last year