douglasgscofield / hcluster
My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/
☆8Updated 2 years ago
Alternatives and similar repositories for hcluster:
Users that are interested in hcluster are comparing it to the libraries listed below
- ☆28Updated 2 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11Updated 6 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- ☆21Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- convert a blast output to a bed file☆12Updated 9 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆34Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 weeks ago
- Simple script to generate whole-genome coverage plots☆18Updated 9 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated 3 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 10 months ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- ☆32Updated 4 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆9Updated 3 years ago
- Evolutionary Transcriptomics with R☆42Updated 2 weeks ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago
- Transposable Elements MOvement detection using LOng reads☆21Updated 4 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 weeks ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago