BessieChen / Coursera-Genome-Assembly-Programming-Challenge
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
☆8Updated 6 years ago
Alternatives and similar repositories for Coursera-Genome-Assembly-Programming-Challenge:
Users that are interested in Coursera-Genome-Assembly-Programming-Challenge are comparing it to the libraries listed below
- Genome Assembly, de Bruijn Graph, Overlap Graph, Bubbles and Tips Removal, Optimal K-mer, Phi X174 Genome, Error-Prone Reads, Universal C…☆22Updated 11 months ago
- Codes from Coursera's course Algorithms for DNA sequencing, part of genomic data science specialization offered by Johns Hopkins Universi…☆24Updated 8 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆46Updated 4 years ago
- Genomic data science specialization☆77Updated 9 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 11 months ago
- Genome Assembly and Annotation Service code☆211Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆222Updated 2 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆19Updated 5 years ago
- VGP repository for the genome assembly working group☆192Updated last year
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- A tool to circularize genome assemblies☆241Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆20Updated this week
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- Solutions to Programming Assignments for Bioinformatics Algorithms (Part 1) on Coursera.org☆30Updated 11 years ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆187Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆106Updated 10 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆204Updated 7 months ago
- k-mer based assembly evaluation☆309Updated 9 months ago
- Making whole bacterial genome sequencing data analysis easy☆105Updated 5 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 6 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆137Updated 2 weeks ago
- A structural variation pipeline for short-read sequencing☆187Updated last week
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆176Updated 6 months ago
- ☆178Updated last year
- ☆69Updated 4 years ago
- An efficient FASTQ manipulation suite☆137Updated 5 years ago
- Python library to parse file formats related to Illumina bead arrays☆46Updated 2 months ago
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Updated this week