Alternatives and similar repositories for Netflux:

Users that are interested in Netflux are comparing it to the libraries listed below

• PMBio / spatialdata-workshops
  ☆12Updated 3 weeks ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆56Updated 10 months ago
• ElisabethRoesch / Perspective_Julia_for_Biologists
  Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I
  ☆99Updated 2 years ago
• sysbio-curie / PROFILE
  Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper
  ☆11Updated 2 years ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆108Updated 3 weeks ago
• sib-swiss / intermediate-python-training
  ☆66Updated last week
• pachterlab / kb_python
  A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
  ☆160Updated 2 weeks ago
• kharchenkolab / Baysor
  Bayesian Segmentation of Spatial Transcriptomics Data
  ☆170Updated 3 months ago
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆52Updated last week
• Teichlab / bbknn
  Batch balanced KNN
  ☆155Updated last year
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
  ☆135Updated 3 weeks ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆23Updated this week
• okadalabipr / intro_to_param_estim
  Parameter estimation of ODE models describing biological processes
  ☆10Updated 4 years ago
• crazyhottommy / machine-learning-resource
  ☆78Updated 4 months ago
• fayjustin / computational_biology
  course material
  ☆126Updated 2 years ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆32Updated 4 years ago
• MetabolicAtlas / MetabolicAtlas
  Open source genome-scale metabolic models of human and model animals
  ☆21Updated 2 months ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated last week
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆44Updated last month
• saezlab / decoupler-py
  Python package to perform enrichment analysis from omics data.
  ☆184Updated last month
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆91Updated 2 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆119Updated last month
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆57Updated last week
• ingewortel / celltrackR
  An R package for the analysis and interpretation of cell migration tracks.
  ☆13Updated 7 months ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆280Updated this week
• HaojiaWu / CellScopes.jl
  A Julia package for single cell and spatial data analysis
  ☆34Updated 3 months ago
• sysbio-curie / Neko
  ☆12Updated last month
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆105Updated this week
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆110Updated 7 months ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆46Updated last week