berenslab / mini-atlasLinks
Phenotypic variation of transcriptomic cell types in mouse motor cortex
☆26Updated 4 years ago
Alternatives and similar repositories for mini-atlas
Users that are interested in mini-atlas are comparing it to the libraries listed below
Sorting:
- COmmon COordinate FRAMEwork in R☆37Updated 5 years ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆91Updated 2 weeks ago
- ☆11Updated 2 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆21Updated last month
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆92Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 4 years ago
- Software for processing and analyzing STARmap experiments.☆38Updated 6 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Brain Cell Type Specific Gene Expression Analysis☆17Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- QC and cell type assignment for patch-seq transcriptomics data☆23Updated last year
- Human cortical cell types☆25Updated 6 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 3 years ago
- ☆53Updated 4 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- Developing a Brain Atlas through Deep Learning☆53Updated 4 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆25Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 2 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- Example vignette for dotdotdot software☆18Updated 4 years ago
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 5 months ago
- Code for preparing and running the imageCCA method.☆20Updated 8 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago