berenslab / mini-atlasLinks
Phenotypic variation of transcriptomic cell types in mouse motor cortex
☆26Updated 4 years ago
Alternatives and similar repositories for mini-atlas
Users that are interested in mini-atlas are comparing it to the libraries listed below
Sorting:
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 4 years ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago
- ☆11Updated 2 years ago
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆86Updated this week
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆17Updated 4 years ago
- Software for processing and analyzing STARmap experiments.☆38Updated 6 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆89Updated 4 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- Brain Cell Type Specific Gene Expression Analysis☆16Updated last year
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆20Updated last week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- QC and cell type assignment for patch-seq transcriptomics data☆22Updated last year
- Human cortical cell types☆24Updated 6 years ago
- ☆52Updated 4 years ago
- Density valley clustering (cluserdv). Matlab implementation.☆27Updated 7 years ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆100Updated 3 months ago
- Developing a Brain Atlas through Deep Learning☆53Updated 2 months ago
- Example vignette for dotdotdot software☆18Updated 4 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
- UCLA Multiphoton Miniature Microscope☆15Updated 5 months ago
- ☆16Updated 3 years ago
- A Python Shiny project with Joachim Goedhart☆20Updated last year
- Tools and scripts for EASI-FISH image data analysis☆17Updated 3 years ago
- Code for preparing and running the imageCCA method.☆20Updated 8 years ago