berenslab / mini-atlas
Phenotypic variation of transcriptomic cell types in mouse motor cortex
☆24Updated 3 years ago
Alternatives and similar repositories for mini-atlas:
Users that are interested in mini-atlas are comparing it to the libraries listed below
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆13Updated last year
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆15Updated 3 years ago
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆58Updated this week
- ☆10Updated last year
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆86Updated 3 years ago
- Tools for working with single-neuron morphological reconstructions☆21Updated 8 months ago
- A system for building mouse brain atlas from histology series☆11Updated 4 years ago
- computes intrinsic cell features from intracellular electrophysiology data☆27Updated 2 months ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆70Updated 7 months ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Updated 9 years ago
- Software for processing and analyzing STARmap experiments.☆34Updated 5 years ago
- A Python Shiny project with Joachim Goedhart☆17Updated 6 months ago
- Human cortical cell types☆24Updated 5 years ago
- Python package providing mesoscale connectivity models for mouse.☆39Updated 9 months ago
- Developing a Brain Atlas through Deep Learning☆51Updated last year
- manually align specimens to annotated 3D spaces☆19Updated last year
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 9 years ago
- ☆18Updated 2 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆15Updated 2 months ago
- ☆48Updated 3 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 2 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- Dimensionality-reduction and classification for morphology and electrophysiology☆13Updated 3 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 weeks ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆35Updated this week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆36Updated 3 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆14Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago