Alternatives and similar repositories for PeacoQC

Users that are interested in PeacoQC are comparing it to the libraries listed below

• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆28Updated 2 months ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆44Updated 7 months ago
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 5 months ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• markrobinsonuzh / cytofWorkflow
  ☆16Updated last year
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆56Updated 5 months ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆20Updated 2 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆47Updated last week
• korsunskylab / rcna
  R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
  ☆15Updated last year
• Teichlab / cellity
  ☆37Updated 8 years ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• lorenzobonaguro / cyCONDOR
  Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…
  ☆19Updated last week
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆38Updated 3 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• scverse / anndataR
  AnnData interoperability in R
  ☆78Updated this week
• pachterlab / concordexR
  Compute the neighborhood consolidation matrix and identify SHRs
  ☆13Updated 4 months ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆66Updated 4 years ago
• kdzimm / PseudoreplicationPaper
  Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication…
  ☆20Updated 4 years ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆59Updated last year
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• Drinchai / BloodGen3Module
  This R package for performing module repertoire analyses and generating fingerprint representations
  ☆15Updated 3 years ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 2 weeks ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆27Updated 4 months ago
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆14Updated last year
• bioturing / signac
  An analytics package for single cell data
  ☆22Updated 3 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated last month
• carmonalab / SignatuR
  A database of useful gene signatures for single-cell analysis
  ☆25Updated 2 weeks ago