andreped / vsi2tifLinks
Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF
☆24Updated 3 months ago
Alternatives and similar repositories for vsi2tif
Users that are interested in vsi2tif are comparing it to the libraries listed below
Sorting:
- Tools to build deep learning pipelines.☆112Updated last year
- Virtual Alignment of pathoLogy Image Series☆192Updated 5 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆85Updated last year
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆25Updated 3 months ago
- List of pathology feature extractors and foundation models☆159Updated 5 months ago
- Awesome List of Digital and Computational Pathology Resources☆94Updated 10 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated 3 weeks ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated 3 weeks ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆32Updated last year
- ☆28Updated last year
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated 9 months ago
- Solid Tumor Associative Modeling in Pathology☆102Updated this week
- ☆37Updated 8 months ago
- Stain normalization tools for histological analysis and computational pathology☆164Updated 3 weeks ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆103Updated 9 months ago
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆116Updated 4 months ago
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆144Updated 9 months ago
- Standardized benchmark for computational pathology foundation models.☆119Updated 3 weeks ago
- First commit☆64Updated 3 years ago
- ☆57Updated 3 years ago
- GrandQC tool for tissue detection and quality control in pathology☆75Updated 9 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆109Updated 10 months ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆163Updated last year
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆345Updated 4 months ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆25Updated last year
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆77Updated 10 months ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆56Updated 11 months ago
- Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms☆38Updated last year
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆44Updated 11 months ago
- ☆19Updated 2 years ago