Alternatives and similar repositories for vsi2tif:

Users that are interested in vsi2tif are comparing it to the libraries listed below

• TissueImageAnalytics / iguana
  Interpretable Gland-Graph Networks
  ☆20Updated 10 months ago
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆33Updated last month
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆34Updated last year
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆138Updated last month
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆66Updated 2 years ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆66Updated 11 months ago
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆88Updated this week
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆54Updated this week
• wenqi006 / SlideGraph
  ☆52Updated 3 years ago
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆90Updated 2 months ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆87Updated 6 months ago
• taliq / TEA-graph
  First commit
  ☆59Updated 2 years ago
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆23Updated 9 months ago
• smujiang / WSITools
  Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…
  ☆47Updated last month
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆42Updated 9 months ago
• agentdr1 / LA_MIL
  Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch
  ☆24Updated last year
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆50Updated 2 years ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆93Updated last year
• mahmoodlab / PANTHER
  Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
  ☆108Updated last week
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆126Updated 2 weeks ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆96Updated 2 months ago
• vqdang / H2T
  ☆36Updated last year
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆33Updated last month
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆65Updated 6 months ago
• superhy / LCSB-MIL
  source code of Inter-MIL: self-interactive multi-instance learning
  ☆10Updated last year
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆94Updated last week
• cwlkr / torchvahadane
  Gpu accelerated vahadane stain normalization for Digital Pathology workflows.
  ☆21Updated 11 months ago
• wanghao14 / Stain_Normalization
  Some stain normalization code
  ☆85Updated 2 years ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆51Updated 2 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 7 months ago