Alternatives and similar repositories for vsi2tif

Users that are interested in vsi2tif are comparing it to the libraries listed below

• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆79Updated last year
• impromptuRong / hd_wsi
  ☆33Updated 2 months ago
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆101Updated 6 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆35Updated last year
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆79Updated this week
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆35Updated 3 months ago
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆129Updated 4 months ago
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆28Updated last year
• taliq / TEA-graph
  First commit
  ☆62Updated 2 years ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆92Updated last month
• wenqi006 / SlideGraph
  ☆55Updated 3 years ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆92Updated last year
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆157Updated 5 months ago
• open-pathology / awesome-pathology
  Awesome List of Digital and Computational Pathology Resources
  ☆61Updated 4 months ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆67Updated 2 years ago
• mahmoodlab / MMP
  Multimodal prototyping for cancer survival prediction - ICML 2024
  ☆83Updated 3 months ago
• trislaz / wsi_mil
  ☆19Updated last year
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆67Updated 4 months ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆33Updated last year
• qinghezeng / Histo2GeneSignatures
  Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images
  ☆19Updated 11 months ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated 2 months ago
• fuscc-deep-path / sc_MTOP
  sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…
  ☆33Updated last month
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆70Updated 10 months ago
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆47Updated 3 months ago
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆60Updated last year
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆102Updated 6 months ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆100Updated 4 months ago
• CielAl / torch-staintools
  Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms
  ☆30Updated last year
• DIAGNijmegen / pathology-hooknet-tls
  ☆17Updated 6 months ago
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆90Updated 6 months ago