Alternatives and similar repositories for DeeperHistReg

Users that are interested in DeeperHistReg are comparing it to the libraries listed below

• mahmoodlab / Patch-GCN
  Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
  ☆155Updated last year
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆178Updated 3 months ago
• WonderLandxD / opensdpc
  Python library for processing whole slide images (WSIs) in sdpc format
  ☆58Updated 8 months ago
• DIAGNijmegen / pathology-hooknet
  ☆64Updated last year
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆81Updated last year
• wenqi006 / SlideGraph
  ☆56Updated 3 years ago
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆93Updated 10 months ago
• Xiyue-Wang / RetCCL
  ☆101Updated last year
• DIAGNijmegen / pathology-hooknet-tls
  ☆26Updated 10 months ago
• cwlkr / torchvahadane
  Gpu accelerated vahadane stain normalization for Digital Pathology workflows.
  ☆25Updated last year
• HaoyuCui / WSI_Normalizer
  A simple tool used for normalize whole slide images, support macenko, reinhard, vahadane (GPU accelerate)
  ☆28Updated 4 months ago
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆32Updated last year
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated last month
• KatherLab / HIA
  Histopathology Image Analysis
  ☆92Updated 2 years ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆69Updated 2 years ago
• smujiang / WSITools
  Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…
  ☆56Updated 9 months ago
• hrlblab / CS-MIL
  ☆54Updated 5 months ago
• Xiyue-Wang / TransPath
  ☆330Updated 6 months ago
• CielAl / torch-staintools
  Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms
  ☆35Updated last year
• Biooptics2021 / PathFinder
  ☆56Updated 2 years ago
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆322Updated 2 months ago
• mahmoodlab / PANTHER
  Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
  ☆141Updated 7 months ago
• vqdang / H2T
  ☆36Updated 2 years ago
• mahmoodlab / MIL-Lab
  Feather - Lightweight supervised slide foundation models (ICML 2025)
  ☆90Updated 2 months ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆106Updated 10 months ago
• mahmoodlab / Patho-Bench
  Standardized benchmark for computational pathology foundation models.
  ☆102Updated last month
• aimagelab / mil4wsi
  DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs
  ☆61Updated 10 months ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆35Updated last year
• histocartography / hact-net
  ☆71Updated 4 years ago
• PathologyDataScience / MuTILs_Panoptic
  Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…
  ☆25Updated last month