A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.
☆20Feb 23, 2026Updated 2 months ago
Alternatives and similar repositories for Bioinformatics
Users that are interested in Bioinformatics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- University of Sydney colour palettes for ggplot2☆15Feb 22, 2026Updated 2 months ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆17Nov 7, 2025Updated 5 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Oct 25, 2024Updated last year
- Nextflow pipeline to process long read ONT and/or pacbio HiFi data☆18Mar 31, 2026Updated last month
- A Safe Space to Experience Pull Requests☆13Dec 14, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA.…☆16Feb 3, 2026Updated 2 months ago
- This is a simple variational autoencoder (VAE) implemented in torch for R☆11Jan 4, 2022Updated 4 years ago
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 4 years ago
- Misc. documents for the Bioinformatics Open Source Conference (BOSC), https://www.open-bio.org/events/bosc/☆13Apr 6, 2026Updated 3 weeks ago
- ☆14Updated this week
- Imputation steps using the Michigan or Sanger imputation server.☆16May 6, 2021Updated 4 years ago
- ☆27Aug 2, 2023Updated 2 years ago
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Sep 16, 2023Updated 2 years ago
- 🌼 A token-friendly local MCP server for DaisyUI component documentation using their public llms.txt.☆56Mar 8, 2026Updated last month
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆16Jan 20, 2025Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Jul 2, 2024Updated last year
- Provides syntax highlighting for Apptainer/Singularity definition files.☆10Dec 24, 2025Updated 4 months ago
- ☆17Updated this week
- ☆16Jun 2, 2021Updated 4 years ago
- Manual Baseline Models☆10Nov 7, 2024Updated last year
- Introduction to Snakemake for Bioinformatics☆22Apr 21, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Benchmark empirical datasets for phylogenetic method development☆19Dec 5, 2023Updated 2 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆16Nov 14, 2022Updated 3 years ago
- ☆14Apr 8, 2026Updated 3 weeks ago
- An easy-to-use Python library for lightning-fast persistent function caching.☆18May 3, 2025Updated 11 months ago
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆35Apr 9, 2026Updated 3 weeks ago
- Anatomogram illustrating Expression Atlas experiments☆53Jul 30, 2020Updated 5 years ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 7 months ago
- ☆15Apr 2, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Super small biological datasets for unit testing☆23Apr 22, 2024Updated 2 years ago
- This project is in the process of being ported over to another repository.☆16May 23, 2014Updated 11 years ago
- The promise of community-driven preprints in ecology and evolution☆17Jan 14, 2025Updated last year
- ☆38Apr 14, 2022Updated 4 years ago
- examples of using Singularity containers for web-based products☆10Jan 2, 2018Updated 8 years ago
- Site for Genomic Data Science Class☆17Sep 7, 2015Updated 10 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago