BlueBrain / Atlas-Download-Tools
Search, download, and prepare brain atlas data.
☆17Updated last year
Related projects: ⓘ
- Developing a Brain Atlas through Deep Learning☆50Updated last year
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆82Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆49Updated 4 years ago
- The ImageJ framework for quantification of neuronal anatomy☆41Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆119Updated 2 weeks ago
- Tools for distributed alignment of massive images☆74Updated last month
- ☆12Updated 5 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆32Updated last month
- AICS Segmentation (One-Way) Mirror☆44Updated 3 years ago
- COmmon COordinate FRAMEwork in R☆35Updated 4 years ago
- Efficient cell detection in large images using cellfinder in napari☆24Updated 8 months ago
- A system for building mouse brain atlas from histology series☆11Updated 4 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆105Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆121Updated 2 weeks ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆29Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆76Updated 2 weeks ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 3 years ago
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆20Updated this week
- ☆16Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆45Updated last week
- manually align specimens to annotated 3D spaces☆19Updated last year
- ☆45Updated 4 years ago
- MethodsJ2☆14Updated 2 years ago
- Umbrella package to help install/load nat packages☆10Updated 3 years ago
- Create 3D/4D animations using a natural language-based syntax☆57Updated last year
- ☆11Updated last year
- Generate markdown notebooks from ImageJ Macro☆23Updated 3 years ago
- ☆22Updated last week
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated 9 months ago