BlueBrain / Atlas-Download-ToolsLinks
Search, download, and prepare brain atlas data.
☆17Updated 2 years ago
Alternatives and similar repositories for Atlas-Download-Tools
Users that are interested in Atlas-Download-Tools are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Updated 4 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 3 weeks ago
- Developing a Brain Atlas through Deep Learning☆53Updated 5 months ago
- Tools for distributed alignment of massive images☆92Updated this week
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆15Updated 4 years ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Updated 3 weeks ago
- Open source Python library for building bioimage analysis pipelines☆188Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- www.vaa3d.org☆80Updated 7 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 6 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated this week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆138Updated last month
- Raw format to OME-TIFF converter☆56Updated 2 weeks ago
- multimodal whole slide image registration in a graph structure☆100Updated last year
- Bio-Formats image file format to raw format converter☆103Updated last month
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆152Updated this week
- A napari plugin for clustering objects according to their properties.☆90Updated last week
- ☆17Updated 2 years ago
- Python image segmentation plugin☆31Updated 5 years ago
- Cookiecutter for napari plugins☆71Updated last year
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- The framework for quantification of neuronal anatomy☆55Updated this week
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago
- ☆32Updated 6 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Updated 2 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago