Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods
☆39Apr 15, 2026Updated 2 months ago
Alternatives and similar repositories for awesome-smallmol-massspec-ml
Users that are interested in awesome-smallmol-massspec-ml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆24Apr 18, 2026Updated 2 months ago
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 2 years ago
- Predicting MS1 precursor chemical formula from MS/MS data☆25Sep 20, 2023Updated 2 years ago
- Tandem Mass Spectrum Prediction with Graph Transformers☆100Aug 26, 2024Updated last year
- ☆23Sep 18, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆132May 8, 2026Updated last month
- Converting LC−MS-based Untargeted Metabolomics Data into Image towards Clinical Diagnosis☆12Apr 13, 2023Updated 3 years ago
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆14Jan 22, 2026Updated 4 months ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆21Oct 15, 2024Updated last year
- MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION☆20Sep 23, 2025Updated 8 months ago
- Predicting tandem mass spectra from molecules☆142Updated this week
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- ☆11Nov 30, 2024Updated last year
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆186Jun 5, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆52Apr 28, 2026Updated last month
- ☆15Oct 4, 2021Updated 4 years ago
- ☆115Mar 10, 2026Updated 3 months ago
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆17Jul 9, 2024Updated last year
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆14Nov 23, 2024Updated last year
- a python package for molecular formula analysis in MS-based small molecule studies☆36Jan 28, 2026Updated 4 months ago
- R Interface to the ClassyFire REST API☆14May 20, 2026Updated 3 weeks ago
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆79Jun 5, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- metabolite identification R-package for metabolomic high-resolution LC-MS datasets.☆16Apr 19, 2017Updated 9 years ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆22Apr 28, 2026Updated last month
- Mass Spectrometry for Small Molecules using Deep Learning☆137Jun 30, 2021Updated 4 years ago
- Publicly-accessible repo for ACS paper "Rapid Approximate Subset-Based Spectra Prediction for Electron Ionization−Mass Spectrometry" (RAS…☆27Jan 25, 2023Updated 3 years ago
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆35Aug 19, 2021Updated 4 years ago
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- ☆11Apr 25, 2026Updated last month
- a curated list of resources for everyone interested in learning about digital chemistry☆48Jan 25, 2026Updated 4 months ago
- Package for analyzing MS with Python☆10Jan 11, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Feb 20, 2026Updated 3 months ago
- CANOPUS visualization for Jupyter notebook☆20Mar 9, 2022Updated 4 years ago
- ☆29Jan 16, 2026Updated 5 months ago
- SECS is a machine learning framework designed for structure elucidation from spectra such as NMR and IR.☆30Mar 19, 2026Updated 3 months ago
- Code for generation and benchmarks of the Multimodal Spectroscopic Dataset☆56Jun 23, 2025Updated 11 months ago
- Chemometric analysis methods implemented in python☆14Jul 13, 2025Updated 11 months ago
- ☆13May 21, 2023Updated 3 years ago