Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods
☆35Jan 18, 2026Updated last month
Alternatives and similar repositories for awesome-smallmol-massspec-ml
Users that are interested in awesome-smallmol-massspec-ml are comparing it to the libraries listed below
Sorting:
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆23Oct 13, 2025Updated 4 months ago
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 2 years ago
- Predicting MS1 precursor chemical formula from MS/MS data☆24Sep 20, 2023Updated 2 years ago
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆14Jan 22, 2026Updated last month
- Converting LC−MS-based Untargeted Metabolomics Data into Image towards Clinical Diagnosis☆12Apr 13, 2023Updated 2 years ago
- Tandem Mass Spectrum Prediction with Graph Transformers☆99Aug 26, 2024Updated last year
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆115Nov 13, 2025Updated 3 months ago
- Predicting tandem mass spectra from molecules☆133Feb 10, 2026Updated last month
- ☆11Nov 30, 2024Updated last year
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆20Oct 15, 2024Updated last year
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION☆20Sep 23, 2025Updated 5 months ago
- ☆22Sep 18, 2025Updated 5 months ago
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆163Updated this week
- Package for analyzing MS with Python☆10Jan 11, 2018Updated 8 years ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- a python package for molecular formula analysis in MS-based small molecule studies☆33Jan 28, 2026Updated last month
- Publicly-accessible repo for ACS paper "Rapid Approximate Subset-Based Spectra Prediction for Electron Ionization−Mass Spectrometry" (RAS…☆26Jan 25, 2023Updated 3 years ago
- Shiny app for retention time prediction☆11Dec 1, 2025Updated 3 months ago
- ☆11Feb 20, 2026Updated 2 weeks ago
- R Interface to the ClassyFire REST API☆12Feb 21, 2025Updated last year
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆15Jun 1, 2023Updated 2 years ago
- Chemometric analysis methods implemented in python☆14Jul 13, 2025Updated 7 months ago
- A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis☆15Feb 27, 2026Updated last week
- data processing for MS-based metabolomics☆15Nov 10, 2024Updated last year
- ☆105Jul 6, 2025Updated 8 months ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- Peak detection for untargeted metabolomics using Neural Network. High-level API based on peakonly by @Arseha.☆17Feb 28, 2026Updated last week
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆47Feb 23, 2026Updated 2 weeks ago
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆16Apr 25, 2023Updated 2 years ago
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆75Jun 5, 2024Updated last year
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆34Aug 19, 2021Updated 4 years ago
- ☆11Oct 7, 2025Updated 5 months ago
- ☆15Oct 4, 2021Updated 4 years ago
- G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics☆17Mar 9, 2024Updated 2 years ago
- metabolite identification R-package for metabolomic high-resolution LC-MS datasets.☆16Apr 19, 2017Updated 8 years ago
- Relaunch of the initial MetFrag project.☆19Mar 2, 2026Updated last week
- Flash entropy search☆16Sep 24, 2023Updated 2 years ago
- ☆21Mar 26, 2025Updated 11 months ago