popgenmethods / momi
MOran Models for Inference
☆9Updated 7 years ago
Alternatives and similar repositories for momi:
Users that are interested in momi are comparing it to the libraries listed below
- machine learning applications for dadi☆14Updated 2 months ago
- Infer the age of ancestral nodes in a tree sequence.☆20Updated this week
- An R package to detect selection in biological pathways☆14Updated last year
- Automated and distributed population genetic model inference from allele frequency spectra☆15Updated last week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated last year
- Sweep Inference Framework (controlling for correlation)☆29Updated 8 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆11Updated 6 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆54Updated 9 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated 2 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated last year
- Sampling and inference of genealogies with recombination☆30Updated 6 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Software for detecting introgression using supervised machine learning☆19Updated 2 years ago
- Two locus likelihoods and ARGs under changing population size☆13Updated 2 weeks ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Updated 5 years ago
- ☆20Updated 5 months ago
- Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC☆9Updated 4 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆14Updated this week
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆12Updated last month
- Minimal Assumption Genomic Inference of Coalescence☆14Updated last year
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆13Updated last year
- ☆14Updated 2 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Updated last year
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- ☆11Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated last year
- ☆26Updated 3 years ago