Alternatives and similar repositories for Togothon

Users that are interested in Togothon are comparing it to the libraries listed below

• pitagora-network / DAT2-cwl
  Common Workflow Language definition files for workflows introduced in DAT2
  ☆11Updated 3 years ago
• ddbj / human-reseq
  ☆11Updated 3 years ago
• pitagora-network / pitagora-cwl
  Common Workflow Language tools and workflows by Pitagora-Network
  ☆33Updated 2 years ago
• MoMI-G / MoMI-G
  Modular Multi-scale Integrated Genome Graph Browser
  ☆92Updated 7 months ago
• yyoshiaki / ikra
  RNAseq pipeline centered on Salmon
  ☆27Updated 6 months ago
• suimye / cage_tutorial
  Step by step tutorial for CAGE analysis
  ☆9Updated 3 years ago
• workflow-meetup-jp / workflow-meetup
  About Workflow related meetup
  ☆14Updated 6 months ago
• ocxtal / minialign
  [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…
  ☆125Updated 6 years ago
• MotomuMatsui / gs
  Graph Splitting Method
  ☆14Updated 5 years ago
• mkasa / klab
  Kasahara lab. public repository.
  ☆14Updated last month
• genome-sci / python_bioinfo_2022
  ☆12Updated 2 years ago
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆103Updated 5 months ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 5 years ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆98Updated last year
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆85Updated 6 years ago
• NBISweden / EMBLmyGFF3
  An efficient way to convert gff3 annotation files into EMBL format ready to submit.
  ☆59Updated last year
• sapporo-wes / sapporo
  A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…
  ☆20Updated 2 years ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 4 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆92Updated last month
• Kan-E / RNAseqChef
  Web app for automated, systematic, and integrated RNA-seq differential expression analysis
  ☆15Updated 2 months ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆110Updated 2 months ago
• friend1ws / nanomonsv
  SV detection tool for nanopore sequence reads
  ☆91Updated 2 months ago
• kfuku52 / amalgkit
  RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
  ☆11Updated this week
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆41Updated 2 years ago
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆67Updated 2 weeks ago
• nig-sc / nigsc_homepage2
  ☆3Updated last week
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆105Updated 2 weeks ago
• epi2me-labs / wf-basecalling
  ☆40Updated 3 weeks ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆57Updated last year