inutano / pfastq-dumpLinks
parallel-fastq-dump implementation in bash script
☆41Updated 5 years ago
Alternatives and similar repositories for pfastq-dump
Users that are interested in pfastq-dump are comparing it to the libraries listed below
Sorting:
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆72Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆49Updated 4 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- ☆38Updated 5 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Tutorial Website☆59Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 11 months ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ☆117Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆34Updated 7 months ago
- ☆30Updated 6 years ago
- A list of alternative splicing analysis resources