Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.
☆19Apr 17, 2018Updated 8 years ago
Alternatives and similar repositories for polygenic-risk-scores
Users that are interested in polygenic-risk-scores are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing high-throughput drug indication resources.☆21Mar 15, 2016Updated 10 years ago
- A tutorial on how to run basic polygenic risk score analysis☆90Jan 24, 2023Updated 3 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- ☆10Jul 2, 2024Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆17Nov 29, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python script for multivariate GWAS meta-analysis☆25Dec 6, 2024Updated last year
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Oct 14, 2017Updated 8 years ago
- Reproducible GSEA Benchmarking☆14May 14, 2026Updated 2 months ago
- qstat wrapper☆17Nov 25, 2020Updated 5 years ago
- ☆13Nov 5, 2023Updated 2 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- Estimate genetic correlation using predicted expression☆28Mar 8, 2018Updated 8 years ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆209Apr 10, 2026Updated 4 months ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆16Apr 5, 2019Updated 7 years ago
- Monthly air passengers and landings at San Francisco International Airport (SFO)☆12Mar 16, 2023Updated 3 years ago
- ☆14Jan 13, 2017Updated 9 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Jan 28, 2022Updated 4 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆56Oct 19, 2025Updated 9 months ago
- ☆11Jul 8, 2024Updated 2 years ago
- ☆20Jan 8, 2024Updated 2 years ago
- Evaluation of phasing performance☆23Mar 6, 2018Updated 8 years ago
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Toolset for Chromosome X-Wide Association Studies☆13May 1, 2018Updated 8 years ago
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- VisBERT: Demo web app for "How Does BERT Answer Questions?"☆11Jul 22, 2023Updated 3 years ago
- slideToolkit: a free toolset for analyzing full size virtual histology slides☆11May 22, 2024Updated 2 years ago
- Tissue of ACTion scores for Investigating Complex trait-Associated Loci☆13Mar 27, 2021Updated 5 years ago
- Hands-On Machine Learning Using Amazon SageMaker [video], published by Packt☆16Dec 8, 2022Updated 3 years ago
- ☆12Apr 26, 2021Updated 5 years ago
- Pariwise analysis of GWAS☆48Sep 27, 2018Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Base-wise aggregation and functional prediction for human non-coding regulatory variants☆14Dec 20, 2023Updated 2 years ago
- ☆32May 7, 2026Updated 3 months ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated last year
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- Tools for doing x way meta-analysis☆16Jun 30, 2026Updated last month