Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.
☆19Apr 17, 2018Updated 7 years ago
Alternatives and similar repositories for polygenic-risk-scores
Users that are interested in polygenic-risk-scores are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing high-throughput drug indication resources.☆19Mar 15, 2016Updated 10 years ago
- A tutorial on how to run basic polygenic risk score analysis☆84Jan 24, 2023Updated 3 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- ☆10Jul 2, 2024Updated last year
- Breast cancer risk prediction using genotyped data☆12Oct 11, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Oct 14, 2017Updated 8 years ago
- Python script for multivariate GWAS meta-analysis☆24Dec 6, 2024Updated last year
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 4 months ago
- Code for multivariate genome wide association meta analysis☆25Aug 20, 2019Updated 6 years ago
- qstat wrapper☆17Nov 25, 2020Updated 5 years ago
- ☆12Nov 5, 2023Updated 2 years ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆202Aug 21, 2024Updated last year
- sharing interactive single cell gene expression visualizations from Seurat☆12May 18, 2023Updated 2 years ago
- Estimate genetic correlation using predicted expression☆25Mar 8, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- Short tutorial on knitr/markdown and JS visualization libraries googleVis and rCharts☆16Sep 19, 2013Updated 12 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated 2 months ago
- Monthly air passengers and landings at San Francisco International Airport (SFO)☆12Mar 16, 2023Updated 3 years ago
- ☆14Jan 13, 2017Updated 9 years ago
- ☆11Jul 8, 2024Updated last year
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- VisBERT: Demo web app for "How Does BERT Answer Questions?"☆11Jul 22, 2023Updated 2 years ago
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆19Jan 8, 2024Updated 2 years ago
- Evaluation of phasing performance☆23Mar 6, 2018Updated 8 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Jan 28, 2022Updated 4 years ago
- A Toolset for Chromosome X-Wide Association Studies☆12May 1, 2018Updated 7 years ago
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Oct 19, 2025Updated 5 months ago
- slideToolkit: a free toolset for analyzing full size virtual histology slides☆11May 22, 2024Updated last year
- Hands-On Machine Learning Using Amazon SageMaker [video], published by Packt☆16Dec 8, 2022Updated 3 years ago
- ☆11Apr 26, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Causal Mixture Model for GWAS summary statistics☆96Dec 17, 2025Updated 3 months ago
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆15Apr 5, 2019Updated 6 years ago
- PopSTR - A Population based microsatellite genotyper☆32Oct 23, 2023Updated 2 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Pariwise analysis of GWAS☆46Sep 27, 2018Updated 7 years ago
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Oct 27, 2023Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 4 years ago