pgormley / polygenic-risk-scores
Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.
☆17Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for polygenic-risk-scores
- Fine-tuning polygenic risk score models using GWAS summary statistics☆38Updated last month
- ☆15Updated 7 years ago
- ☆18Updated 6 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- ☆32Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- Estimate genetic correlation using predicted expression☆19Updated 6 years ago
- Manhattan++☆26Updated 8 months ago
- Code for the in-dev PrediXcan Project☆28Updated 2 years ago
- Statistical fine-mapping pipeline in FinnGen☆26Updated 3 weeks ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆48Updated 5 years ago
- Source code of FUMA GWAS web application☆53Updated 11 months ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 2 months ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- software package for integrative genetic association analysis☆32Updated last year
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated 9 months ago
- genetic correlation between phenotypes in the UK biobank☆13Updated 8 months ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆17Updated 11 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆24Updated 6 months ago
- An R package for generating comparative regional association plots☆18Updated 4 years ago
- R package to perform Bayesian Genome-Wide Association Studies☆38Updated last year
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆20Updated last year
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 4 years ago
- Primo☆16Updated 3 years ago
- ☆16Updated last year
- Sample code for ldsc analyses in UKBB☆28Updated last year
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆22Updated 4 years ago
- Colocalization analysis of genetic association signals☆47Updated this week