Alternatives and similar repositories for membrain-seg

Users that are interested in membrain-seg are comparing it to the libraries listed below

• CellArchLab / MemBrain
  ☆33Updated 2 years ago
• warpem / warp
  ☆57Updated last week
• IsoNet-cryoET / IsoNet
  Self-supervised learning for isotropic cryoET reconstruction
  ☆87Updated 9 months ago
• anmartinezs / polnet
  Generates synthetic datasets for Cryo-Electron Tomography
  ☆29Updated 2 months ago
• czimaginginstitute / AreTomo2
  ☆49Updated last year
• MLI-lab / DeepDeWedge
  Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms
  ☆43Updated 2 months ago
• SBC-Utrecht / pytom-match-pick
  GPU-accelerated template matching for cryo-ET
  ☆46Updated this week
• juglab / cryoCARE_pip
  PIP package of cryoCARE
  ☆38Updated last year
• carsonpurnell / cryotomosim_CTS
  cryo-EM tomogram simulator
  ☆29Updated last week
• cellcanvas / surforama
  a tool for using surfaces to explore volumetric data in napari
  ☆19Updated 5 months ago
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆38Updated last year
• czimaginginstitute / MotionCor3
  Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography
  ☆51Updated last week
• eisfabian / PACEtomo
  Parallel cryo electron tomography via beam image shift
  ☆37Updated this week
• GrotjahnLab / surface_morphometrics
  Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
  ☆27Updated 3 weeks ago
• juglab / cryoCARE_T2T
  Singularity image for cryo-CARE
  ☆35Updated 3 years ago
• wan-lab-vanderbilt / STOPGAP
  STOPGAP is a MATLAB-based package for subtomogram averaging.
  ☆38Updated 2 months ago
• SBC-Utrecht / PyTom
  PyTom software for cryo-tomogram processing
  ☆44Updated 5 months ago
• sklumpe / SerialFIB
  A Modular Platform for Streamlining Automated Cryo-FIB Workflows
  ☆25Updated 7 months ago
• teamtomo / starfile
  STAR file I/O in Python
  ☆51Updated last month
• czimaginginstitute / AreTomo3
  Live processing and real time reconstruction of cryo
  ☆36Updated 2 months ago
• wan-lab-vanderbilt / TOMOMAN
  A set of MATLAB wrapper scripts to help with pre-processing of tomography data.
  ☆19Updated last year
• swing-research / CryoLithe
  ☆16Updated last month
• frosinastojanovska / cryosiam
  Self-supervised deep learning framework for CryoET analysis
  ☆13Updated 3 weeks ago
• teamtomo / mdocfile
  SerialEM mdoc files as pandas dataframes
  ☆13Updated 2 months ago
• phonchi / Computational-CryoET
  A curated list of awesome computational cryo-ET methods.
  ☆63Updated 11 months ago
• SMLC-NYSBC / TARDIS
  Transformer And Rapid Dimensionless Instance Segmentation
  ☆18Updated last week
• anmartinezs / pyseg_system
  De novo analysis for cryo-electron tomography
  ☆22Updated 11 months ago
• MPI-Dortmund / tomotwin-cryoet
  cryo-ET particle picking by representation and metric learning
  ☆39Updated last month
• KudryashevLab / TomoBEAR
  TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…
  ☆28Updated 3 months ago
• bpowell122 / tomodrgn
  Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms
  ☆31Updated 2 months ago