membrane segmentation in 3D for cryo-ET
☆93Feb 27, 2026Updated 4 months ago
Alternatives and similar repositories for membrain-seg
Users that are interested in membrain-seg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆23Jan 29, 2025Updated last year
- ☆38Jun 22, 2023Updated 3 years ago
- ☆57Aug 19, 2024Updated last year
- ☆17Feb 5, 2026Updated 5 months ago
- A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.☆17Mar 4, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GPU-accelerated template matching for cryo-ET☆63Jun 5, 2026Updated last month
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Jul 1, 2026Updated last week
- Miscellaneous scripts for processing cryo-ET data☆22Feb 25, 2025Updated last year
- ☆80Updated this week
- SerialEM mdoc files as pandas dataframes☆14Feb 4, 2026Updated 5 months ago
- PyTom software for cryo-tomogram processing☆46Jan 5, 2026Updated 6 months ago
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆38Jun 5, 2026Updated last month
- PIP package of cryoCARE☆47Apr 2, 2024Updated 2 years ago
- A collaborative knowledge sharing platform for the cryo-ET community☆19Aug 7, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆19Dec 22, 2025Updated 6 months ago
- Live processing and real time reconstruction of cryo☆57May 11, 2026Updated last month
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 5 years ago
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆44Jun 16, 2026Updated 3 weeks ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated last year
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆20Jul 28, 2023Updated 2 years ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆42Jan 30, 2024Updated 2 years ago
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆20Jun 2, 2026Updated last month
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆35Jun 28, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- a tool for using surfaces to explore volumetric data in napari☆22Jun 13, 2026Updated 3 weeks ago
- Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms☆56Jul 29, 2025Updated 11 months ago
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆26Mar 5, 2025Updated last year
- Singularity image for cryo-CARE☆38Jan 7, 2022Updated 4 years ago
- New program to follow Relion projects in a browser!☆48Jan 5, 2026Updated 6 months ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated 2 years ago
- A CLI tool to segment the lamella slab in cryo-ET volumes☆16Oct 21, 2024Updated last year
- cryo-ET particle picking by representation and metric learning☆45Nov 24, 2025Updated 7 months ago
- TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing☆22Mar 12, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography☆61Oct 3, 2025Updated 9 months ago
- Parallel cryo electron tomography via beam image shift☆42Jun 4, 2026Updated last month
- A software for membrane signal subtraction to facilitate high-resolution cryo-EM reconstruction of membrane proteins embedded in their na…☆14Sep 4, 2025Updated 10 months ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆29Jun 29, 2025Updated last year
- ☆11Mar 23, 2023Updated 3 years ago
- Official implementation of CytoSAE: Interpretable Cell Embeddings for Hematology☆26Jul 17, 2025Updated 11 months ago
- SerialEM, Python, and Unity Simulations for Cryo-Electron Tomography and Montage Tomography.☆17Oct 25, 2024Updated last year