This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.
☆24Jan 29, 2025Updated last year
Alternatives and similar repositories for MemBrain-v2
Users that are interested in MemBrain-v2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Feb 5, 2026Updated 6 months ago
- membrane segmentation in 3D for cryo-ET☆94Jul 20, 2026Updated 3 weeks ago
- A vision language model for gigapixel whole slide images in histopathology☆101Sep 4, 2025Updated 11 months ago
- ☆106Mar 12, 2026Updated 4 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆86Feb 6, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Official implementation of CytoSAE: Interpretable Cell Embeddings for Hematology☆27Jul 17, 2025Updated last year
- ☆14Oct 17, 2025Updated 9 months ago
- ☆15Jun 1, 2026Updated 2 months ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated last year
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Aug 3, 2026Updated last week
- GPU-accelerated template matching for cryo-ET☆65Updated this week
- ☆57Aug 19, 2024Updated last year
- Self-supervised deep learning framework for CryoET analysis☆20Apr 11, 2026Updated 3 months ago
- Live processing and real time reconstruction of cryo☆59Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆200Updated this week
- cryo-ET particle picking by representation and metric learning☆46Nov 24, 2025Updated 8 months ago
- Amortized inference for ab initio heterogeneous cryo-EM reconstruction☆42Apr 11, 2023Updated 3 years ago
- RELION external reconstruct functionality☆12Sep 11, 2020Updated 5 years ago
- Graph Representation Analysis for Connected Embeddings☆34Oct 10, 2024Updated last year
- ☆27Jul 31, 2026Updated last week
- IsoNet at higher resolution☆37Jun 25, 2026Updated last month
- SerialEM, Python, and Unity Simulations for Cryo-Electron Tomography and Montage Tomography.☆17Oct 25, 2024Updated last year
- ☆16Nov 3, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms☆56Jul 29, 2025Updated last year
- ☆13May 22, 2025Updated last year
- Rapid Cryo-ET Reconstruction via Transform-Localized Deep Learning☆21Jun 29, 2026Updated last month
- Deep learning tools for converting cryo-EM density maps to protein structures☆23Jan 29, 2025Updated last year
- segmentation of spherical vesicles in cryo-electron tomography☆12Oct 25, 2024Updated last year
- a tool for using surfaces to explore volumetric data in napari☆22Jun 13, 2026Updated last month
- A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.☆18Mar 4, 2023Updated 3 years ago
- PIP package of cryoCARE☆46Apr 2, 2024Updated 2 years ago
- Contextual Analysis Tools for cryoET and subtomogram averaging☆41Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆46Jun 16, 2026Updated last month
- Miscellaneous scripts for processing cryo-ET data☆23Jul 29, 2026Updated last week
- ☆19Dec 22, 2025Updated 7 months ago
- ☆40Updated this week
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆25Jul 29, 2026Updated last week
- ☆82Updated this week
- Transformer And Rapid Dimensionless Instance Segmentation☆24May 30, 2026Updated 2 months ago