This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.
☆21Jan 29, 2025Updated last year
Alternatives and similar repositories for MemBrain-v2
Users that are interested in MemBrain-v2 are comparing it to the libraries listed below
Sorting:
- ☆16Feb 5, 2026Updated last month
- Official implementation of CytoSAE: Interpretable Cell Embeddings for Hematology☆23Jul 17, 2025Updated 8 months ago
- A vision language model for gigapixel whole slide images in histopathology☆94Sep 4, 2025Updated 6 months ago
- membrane segmentation in 3D for cryo-ET☆88Feb 27, 2026Updated 3 weeks ago
- ☆94Mar 12, 2026Updated last week
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆85Feb 6, 2024Updated 2 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆193Updated this week
- ☆14Oct 17, 2025Updated 5 months ago
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Dec 1, 2025Updated 3 months ago
- Neural multiclass ab initio reconstruction for cryo-EM.☆13Dec 5, 2024Updated last year
- ☆36Jun 22, 2023Updated 2 years ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated last year
- Amortized inference for ab initio heterogeneous cryo-EM reconstruction☆42Apr 11, 2023Updated 2 years ago
- Deep learning tools for converting cryo-EM density maps to protein structures☆20Jan 29, 2025Updated last year
- ☆47Feb 20, 2026Updated last month
- segmentation of spherical vesicles in cryo-electron tomography☆12Oct 25, 2024Updated last year
- ☆24Feb 26, 2026Updated 3 weeks ago
- A program interfacing Segment Anything with cryoSPARC via cryosparc-tools to efficiently identify vesicle-embedded membrane proteins and …☆12Feb 18, 2025Updated last year
- cryolo documentation☆12Mar 5, 2026Updated 2 weeks ago
- Parallel cryo electron tomography via beam image shift☆40Feb 17, 2026Updated last month
- a tool for using surfaces to explore volumetric data in napari☆19Feb 25, 2026Updated 3 weeks ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆41Jan 30, 2024Updated 2 years ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- deep structural disentanglement☆42Feb 25, 2026Updated 3 weeks ago
- A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.☆16Mar 4, 2023Updated 3 years ago
- A software for membrane signal subtraction to facilitate high-resolution cryo-EM reconstruction of membrane proteins embedded in their na…☆12Sep 4, 2025Updated 6 months ago
- structural heterogeneity analysis for cryo-ET subtomogram☆10Feb 23, 2026Updated 3 weeks ago
- These are programs that deal with anisotropy (both resolution and sampling)☆22Mar 16, 2018Updated 8 years ago
- Python module to read/write SerialEM navigator files.☆12Jan 17, 2023Updated 3 years ago
- ☆54Aug 19, 2024Updated last year
- ☆20Oct 3, 2023Updated 2 years ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆25Mar 5, 2026Updated 2 weeks ago
- A Matlab script for deconvolving the CTF in single micrographs/tomograms with a Wiener-like filter☆12Jun 26, 2019Updated 6 years ago
- ☆19Dec 22, 2025Updated 3 months ago
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆14Mar 13, 2026Updated last week
- cryo-EM tomogram simulator☆30Mar 5, 2026Updated 2 weeks ago
- ☆13May 22, 2025Updated 9 months ago
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆43Mar 11, 2025Updated last year
- Official implementation of paper "Self-Supervised Noise Modeling and Sparsity Guided Cryo-ET Image Denoising" published on Ultramicroscop…☆16Sep 10, 2024Updated last year