A vision language model for gigapixel whole slide images in histopathology
☆96Sep 4, 2025Updated 8 months ago
Alternatives and similar repositories for HistoGPT
Users that are interested in HistoGPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆22Jan 29, 2025Updated last year
- ☆16Feb 5, 2026Updated 3 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆85Feb 6, 2024Updated 2 years ago
- Official implementation of CytoSAE: Interpretable Cell Embeddings for Hematology☆24Jul 17, 2025Updated 10 months ago
- ☆16Jul 8, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Processing of histological data for cytoarchitecture analyses.☆22Feb 20, 2025Updated last year
- ☆103Mar 12, 2026Updated 2 months ago
- [MICCAI'23] HIGT: Hierarchical Interaction Graph-Transformer for Whole Slide Image Analysis☆31Sep 14, 2024Updated last year
- [ECCV'24] cDP-MIL: Robust Multiple Instance Learning via Cascaded Dirichlet Process☆17Sep 10, 2024Updated last year
- Hibou: Foundational Models for Pathology☆78Oct 23, 2024Updated last year
- The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.☆15Jul 3, 2019Updated 6 years ago
- ☆71Sep 23, 2024Updated last year
- membrane segmentation in 3D for cryo-ET☆90Feb 27, 2026Updated 2 months ago
- COntrastive Biomarker Representation Alignment (COBRA) [CVPR25]☆23Oct 1, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- [MICCAI 2024] Official Repo of "HistGen: Histopathology Report Generation via Local-Global Feature Encoding and Cross-modal Context Inter…☆85Dec 23, 2024Updated last year
- Knowledge-Guided Adaptation of Pathology Foundation Models Improves Cross-domain Generalization and Demographic Fairness☆17Oct 14, 2025Updated 7 months ago
- ☆35Mar 30, 2026Updated last month
- [npj Digital Medicine'24] Aligning Knowledge Concepts to Whole Slide Images for Precise Histopathology Image Analysis☆34Jan 7, 2025Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆196Updated this week
- Solid Tumor Associative Modeling in Pathology☆119May 5, 2026Updated 2 weeks ago
- Official Inplementation of 《WsiCaption: Multiple Instance Generation of Pathology Reports for Gigapixel Whole Slide Images》(MICCAI 2024 O…☆83Jun 6, 2025Updated 11 months ago
- ☆133Apr 11, 2024Updated 2 years ago
- ☆13Apr 28, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Vision-Language Pathology Foundation Model - Nature Medicine☆498Mar 26, 2025Updated last year
- [CVPR 2025] Official Repo of Paper "FOCUS: Knowledge-enhanced Adaptive Visual Compression for Few-shot Whole Slide Image Classification"☆48Jun 6, 2025Updated 11 months ago
- [ECCV 2024] Official Implementation of 《WSI-VQA: Interpreting Whole Slide Image by Generative Question Answering》☆65Dec 18, 2024Updated last year
- Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PL…☆376Sep 20, 2023Updated 2 years ago
- [ECCV 2024 Oral] Knowledge-enhanced pretraining for computational pathology☆50Apr 17, 2026Updated last month
- ☆83May 18, 2025Updated last year
- A Large Language-Vision Assistant for Pathology Image Understanding (BIBM-2024 & Journal of Artificial Intelligence Review 2025)☆64Jun 18, 2025Updated 11 months ago
- Codebase for Quilt-LLaVA☆85Jun 28, 2024Updated last year
- [Cancer Cell, 2026] The official codes for "A Knowledge-enhanced Pathology Vision-language Foundation Model for Cancer Diagnosis"☆60Apr 17, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆19Aug 3, 2025Updated 9 months ago
- Cost-efficient and Instruction-driven AI Conversation in Digital Pathology☆24Nov 5, 2025Updated 6 months ago
- Repository in Support of EAGLE Submission☆23Oct 11, 2025Updated 7 months ago
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆139Jun 3, 2025Updated 11 months ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆399Apr 16, 2026Updated last month
- Multimodal Whole Slide Foundation Model for Pathology - Nature Medicine☆343Dec 13, 2025Updated 5 months ago
- Efficient Approach for Guided Local Examination in Digital Pathology☆35Apr 26, 2026Updated 3 weeks ago