ostojanovic / BSTIM
A Bayesian spatio-temporal interaction model for epidemiology.
☆25Updated 5 years ago
Alternatives and similar repositories for BSTIM
Users that are interested in BSTIM are comparing it to the libraries listed below
Sorting:
- MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture…☆13Updated 10 months ago
- Tools for basic signal processing in epidemiology☆14Updated 3 weeks ago
- Data and code for COVID-19 NPI effectiveness estimation.☆30Updated 4 years ago
- Covid-19 epidemiology - data and analysis☆11Updated last year
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated last week
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 months ago
- Describes a method for monitoring MCMC convergence using ML☆8Updated 4 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Nearest Neighbor Gaussian Processes (NNGP) based models is a family of highly scalable Gaussian processes based models. In brief, NNGP ex…☆15Updated 4 years ago
- GP nowcasting for Brazil Covid-19 mortality☆9Updated 10 months ago
- Markov chain Monte Carlo Standard Errors☆12Updated 3 months ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated last year
- ODE modelling in Python☆29Updated 2 weeks ago
- ☆14Updated 5 years ago
- Gaussian processes on graphs and lattices in Stan.☆17Updated 2 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆21Updated this week
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆12Updated last year
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- plsRglm R package☆17Updated 2 years ago
- FluSight Forecast Submissions☆19Updated last year
- Repository to the R package nowcaster, nowcasting with INLA☆19Updated 2 months ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆12Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 3 months ago
- Workshop on spatial and spatio-temporal models using INLA☆13Updated 5 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- Vivarium microsimulation tools used to model diseases and interventions.☆21Updated this week
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆10Updated 4 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago