Estimate epidemiological delay distributions with brms
☆15Mar 2, 2026Updated last week
Alternatives and similar repositories for epidist
Users that are interested in epidist are comparing it to the libraries listed below
Sorting:
- ☆10Feb 9, 2026Updated last month
- ☆13Mar 2, 2026Updated last week
- Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.☆16Updated this week
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 5 months ago
- R package for real-time Rt estimation with penalized splines☆15Jan 12, 2026Updated last month
- Short course on parametric survival analysis☆15Nov 22, 2024Updated last year
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆63Mar 2, 2026Updated last week
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆28Jan 5, 2026Updated 2 months ago
- ☆21Mar 3, 2026Updated last week
- ☆11Updated this week
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- ☆32Jan 21, 2026Updated last month
- Code and data for the manuscript "Optimal, near-optimal, and robust epidemic control"☆11Jul 23, 2022Updated 3 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11Apr 8, 2025Updated 11 months ago
- Simulate infectious disease transmission with contact tracing☆17Mar 2, 2026Updated last week
- Repository to the R package nowcaster, nowcasting with INLA☆23Sep 20, 2025Updated 5 months ago
- ☆14Oct 20, 2023Updated 2 years ago
- R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility☆15Jan 1, 2026Updated 2 months ago
- R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series☆14Jan 1, 2026Updated 2 months ago
- Course on nowcasting and forecasting of infectious disease dynamics☆23Mar 2, 2026Updated last week
- Utility provides a more meaningful measure of forecast skill than goodness-of-fit☆18Apr 26, 2022Updated 3 years ago
- An R package for simulating line lists☆10Updated this week
- Tools for constructing and plotting Markov Random Fields in R for graphical data☆21Dec 13, 2023Updated 2 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Sep 1, 2025Updated 6 months ago
- Create Contact Matrices from Population Data☆21Feb 24, 2026Updated 2 weeks ago
- Tools for building predictive models in epidemiology.☆16Sep 19, 2025Updated 5 months ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆20Updated this week
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆37Mar 2, 2026Updated last week
- Monitor MCMC runs in the browser☆37Feb 8, 2024Updated 2 years ago
- Analysing epidemic trends using AutoML approaches.☆19Apr 23, 2021Updated 4 years ago
- ☆12Mar 3, 2026Updated last week
- ☆10Sep 30, 2025Updated 5 months ago
- ☆44Aug 19, 2025Updated 6 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- CRAN Task View: Epidemiology☆23Feb 26, 2026Updated last week
- Book on Dynamical Systems Approaches to Infectious Disease Epidemiology☆10Nov 30, 2021Updated 4 years ago
- Code for utilising VAE as means of doing exact MCMC inference in complex high-dimensional space☆14Jun 20, 2023Updated 2 years ago
- ☆23Jun 6, 2025Updated 9 months ago
- Applied category theory applied to epidemiological models☆12Aug 7, 2024Updated last year