Alternatives and similar repositories for COVID19SerialInterval

Users that are interested in COVID19SerialInterval are comparing it to the libraries listed below

• alex1770 / Covid-19

  View on GitHub
  Covid-19 epidemiology - data and analysis
  ☆11Dec 7, 2023Updated 2 years ago
• obrienjoey / ireland_covid_modelling

  View on GitHub
  Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…
  ☆11May 4, 2021Updated 4 years ago
• gkonstantinoudis / ExcessDeathsCOVID

  View on GitHub
  Excess deaths due to COVID-19 pandemic in 2020
  ☆11Jan 27, 2022Updated 4 years ago
• alan-turing-institute / jbc-turing-rss-nowcasting

  View on GitHub
  A Bayesian model for time-series count data with weekend effects and a lagged reporting process
  ☆10Mar 7, 2022Updated 3 years ago
• dylanhmorris / optimal-sir-intervention

  View on GitHub
  Code and data for the manuscript "Optimal, near-optimal, and robust epidemic control"
  ☆11Jul 23, 2022Updated 3 years ago
• ptti / ptti

  View on GitHub
  Population-wide Testing, Tracing and Isolation Models
  ☆15Jan 14, 2021Updated 5 years ago
• covid-19-Re / estimateR

  View on GitHub
  R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic
  ☆11Sep 10, 2024Updated last year
• MrinankSharma / COVID19NPISecondWave

  View on GitHub
  ☆15Aug 18, 2021Updated 4 years ago
• BDI-pathogens / EpiLine

  View on GitHub
  Bayesian Modelling in Epidemiology Case Line Lists
  ☆14Oct 7, 2025Updated 4 months ago
• reconverse / grates

  View on GitHub
  Grouped dates in R
  ☆20Dec 19, 2025Updated last month
• andy-iskauskas / hmer

  View on GitHub
  An R package for Bayes Linear emulation and history matching.
  ☆18Dec 1, 2025Updated 2 months ago
• ryantibs / quantgen

  View on GitHub
  Tools for generalized quantile modeling
  ☆15Sep 28, 2022Updated 3 years ago
• arviz-devs / InferenceObjects.jl

  View on GitHub
  Storage for results of Bayesian inference
  ☆15Updated this week
• julia-actions / julia-docdeploy

  View on GitHub
  ☆19Dec 22, 2025Updated last month
• adamkucharski / 2020-cov-tracing

  View on GitHub
  Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…
  ☆13Dec 18, 2022Updated 3 years ago
• aakhmetz / COVID19IncubationPeriod

  View on GitHub
  Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)
  ☆14Feb 21, 2020Updated 5 years ago
• seabbs / idmodelr

  View on GitHub
  Infectious disease model library and utilities
  ☆15Sep 2, 2022Updated 3 years ago
• reconverse / incidence2

  View on GitHub
  Compute and visualise incidence (reworking of the original incidence package)
  ☆17Nov 28, 2025Updated 2 months ago
• mrc-ide / mcstate

  View on GitHub
  Monte-Carlo State Space Models
  ☆19Jul 1, 2024Updated last year
• mrc-ide / reactidd

  View on GitHub
  This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…
  ☆17May 9, 2024Updated last year
• cobeylab / Rt_estimation

  View on GitHub
  Code to test Rt estimates against synthetic data
  ☆18Nov 30, 2020Updated 5 years ago
• CADDE-CENTRE / Novel-SARS-CoV-2-P1-Lineage-in-Brazil

  View on GitHub
  ☆19Apr 9, 2021Updated 4 years ago
• epiforecasts / inc2prev

  View on GitHub
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Nov 10, 2023Updated 2 years ago
• arviz-devs / PSIS.jl

  View on GitHub
  Pareto smoothed importance sampling
  ☆18Feb 8, 2026Updated last week
• kpzoo / EpiFilter

  View on GitHub
  Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…
  ☆22Dec 9, 2023Updated 2 years ago
• mhoehle / STA427_SM4IDE

  View on GitHub
  Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
  ☆20Dec 22, 2021Updated 4 years ago
• cmmid / hhh4-workshop

  View on GitHub
  Workshop on hhh4 and the endemic-epidemic framework
  ☆18Oct 13, 2022Updated 3 years ago
• goldingn / neuts2efficacy

  View on GitHub
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆17Dec 7, 2023Updated 2 years ago
• mrc-ide / dust

  View on GitHub
  Iterate multiple realisations of stochastic models
  ☆20Aug 15, 2025Updated 5 months ago
• cran-task-views / Epidemiology

  View on GitHub
  CRAN Task View: Epidemiology
  ☆23Updated this week
• covid19br / nowcaster

  View on GitHub
  Repository to the R package nowcaster, nowcasting with INLA
  ☆23Sep 20, 2025Updated 4 months ago
• covid-19-Re / shiny-dailyRe

  View on GitHub
  R app for daily Covid-19 Re estimates
  ☆18Oct 12, 2022Updated 3 years ago
• weinbergerlab / excess_pi_covid

  View on GitHub
  Estimating excess mortality due to P&I in the US related to COVID-19
  ☆25Jan 12, 2021Updated 5 years ago
• ostojanovic / BSTIM

  View on GitHub
  A Bayesian spatio-temporal interaction model for epidemiology.
  ☆25Oct 28, 2019Updated 6 years ago
• nicholasdavies / newcovid

  View on GitHub
  ☆27Feb 25, 2021Updated 4 years ago
• wlandau / instantiate

  View on GitHub
  Pre-compiled CmdStan models in R packages
  ☆24Updated this week
• UKHSA-Internal / coronavirus-dashboard-api-R-sdk

  View on GitHub
  Coronavirus (COVID-19) in the UK - API Service SDK for R
  ☆25Aug 19, 2020Updated 5 years ago
• HopkinsIDD / covidRTPCR

  View on GitHub
  Analysis of RT-PCR sensitivity by day since exposure or symptom onset
  ☆25Oct 23, 2020Updated 5 years ago
• charlesm93 / disease_transmission_workflow

  View on GitHub
  Supplementary code for paper "Bayesian workflow for disease transmission model".
  ☆28Feb 3, 2021Updated 5 years ago