Alternatives and similar repositories for cfa-viral-lineage-model:

Users that are interested in cfa-viral-lineage-model are comparing it to the libraries listed below

• CDCgov / cfa-epinow2-pipeline
  ☆10Updated this week
• reichlab / variant-nowcast-hub
  A repository to store COVID-19 variant nowcasts collected as a modeling hub.
  ☆15Updated this week
• CDCgov / measles-model-chicago-2024
  Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…
  ☆13Updated 3 months ago
• CDCgov / cfa-gam-rt
  R package for real-time Rt estimation with penalized splines
  ☆13Updated 2 weeks ago
• nicsteyn2 / NZWastewaterModelling
  ☆10Updated 4 months ago
• CDCgov / PyRenew
  Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.
  ☆16Updated this week
• nfidd / nfidd
  Course on nowcasting and forecasting of infectious disease dynamcis
  ☆14Updated 3 weeks ago
• mrc-ide / epireview
  ☆30Updated last month
• CDCgov / ww-inference-model
  An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …
  ☆23Updated last month
• CDCgov / Rt-without-renewal
  ☆21Updated last month
• BDI-pathogens / EpiLine
  Bayesian Modelling in Epidemiology Case Line Lists
  ☆13Updated 9 months ago
• shedding-hub / shedding-hub
  Data and statistical models for biomarker shedding.
  ☆13Updated this week
• CDCgov / ixa
  ☆14Updated this week
• athowes / thesis
  Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD, Imperial College London, 2023)
  ☆16Updated last month
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆18Updated this week
• rosannaclairebarnard / covidm-mtd-Omi
  Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…
  ☆11Updated 2 years ago
• andy-iskauskas / hmer
  An R package for Bayes Linear emulation and history matching.
  ☆16Updated 2 weeks ago
• epinowcast / epinowcast
  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…
  ☆61Updated 2 weeks ago
• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated last year
• idem-lab / conmat
  Create Contact Matrices from Population Data
  ☆19Updated 2 weeks ago
• akira-endo / COVID19_clustersize
  Analysis of COVID-19 transmission using cluster size distribution
  ☆11Updated 2 years ago
• SamuelBrand1 / MonkeypoxUK
  Some code for monkeypox
  ☆10Updated 2 years ago
• kpzoo / EpiFilter
  Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…
  ☆22Updated last year
• epiforecasts / scoringutils
  Utilities for Scoring and Assessing Predictions
  ☆52Updated last month
• goldingn / neuts2efficacy
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆18Updated last year
• WHO-Collaboratory / collaboratory-epipipeline-community
  ☆14Updated last year
• epiverse-trace / epiparameter
  R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…
  ☆33Updated 2 weeks ago
• mrc-ide / reactidd
  This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…
  ☆16Updated 9 months ago
• cmmid / hhh4-workshop
  Workshop on hhh4 and the endemic-epidemic framework
  ☆16Updated 2 years ago