cmu-delphi / epiprocess
Tools for basic signal processing in epidemiology
☆14Updated 3 weeks ago
Alternatives and similar repositories for epiprocess
Users that are interested in epiprocess are comparing it to the libraries listed below
Sorting:
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆21Updated this week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Course on nowcasting and forecasting of infectious disease dynamcis☆16Updated last week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆13Updated 6 months ago
- ☆10Updated 7 months ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆23Updated 4 months ago
- ☆11Updated this week
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 11 months ago
- Estimate epidemiological delay distributions with brms☆15Updated last week
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆16Updated this week
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 months ago
- R package for real-time Rt estimation with penalized splines☆14Updated 2 months ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- ☆11Updated last week
- Repository to the R package nowcaster, nowcasting with INLA☆19Updated last month
- Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.☆16Updated last week
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆14Updated 2 months ago
- Create Contact Matrices from Population Data☆20Updated last week
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 4 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- Nearest Neighbor Gaussian Processes (NNGP) based models is a family of highly scalable Gaussian processes based models. In brief, NNGP ex…☆15Updated 4 years ago
- Notebooks and data for StanCon2023 tutorial on BRMS☆16Updated last year
- Utilities for Scoring and Assessing Predictions☆53Updated this week
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated last week
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- ☆17Updated 4 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}☆39Updated last month