cmu-delphi / epiprocess
Tools for basic signal processing in epidemiology
☆13Updated this week
Related projects ⓘ
Alternatives and complementary repositories for epiprocess
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆16Updated this week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- Nearest Neighbor Gaussian Processes (NNGP) based models is a family of highly scalable Gaussian processes based models. In brief, NNGP ex…☆15Updated 4 years ago
- Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}☆33Updated 4 months ago
- ☆17Updated 3 years ago
- Uses Stan sampler and math library to semiparametrically fit linear and multilevel models with additive Bayesian Additive Regression Tree…☆40Updated 2 months ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 3 years ago
- Course on nowcasting and forecasting of infectious disease dynamcis☆11Updated this week
- ☆10Updated last month
- Public Available Code to Conduct Analyses in "Evaluating the Impact of Long-term Exposure to Fine Particulate Matter on Mortality Among t…☆18Updated 11 months ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 5 months ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆16Updated this week
- Matching on generalized propensity scores with continuous exposures☆24Updated last month
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆44Updated this week
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD, Imperial College London, 2023)☆14Updated 2 weeks ago
- ☆36Updated 3 years ago
- Fit stochastic differential equation models with time-varying parameters☆15Updated 5 months ago
- ☆10Updated this week
- HMC and other derivative-based MCMC sampling algorithms for the nimble package☆13Updated 2 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- R Package for "Matching on generalized propensity scores with continuous exposures". An innovative approach for estimating causal effects…☆30Updated this week
- R Package for individual based epidemiological models☆30Updated 2 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago
- Short course on parametric survival analysis☆15Updated last year
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 weeks ago
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆12Updated last year
- Towards a more flexible BART☆22Updated 3 months ago
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆17Updated last month
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago