R Package for individual based epidemiological models
☆32Aug 12, 2025Updated 6 months ago
Alternatives and similar repositories for individual
Users that are interested in individual are comparing it to the libraries listed below
Sorting:
- An R package for Bayes Linear emulation and history matching.☆18Dec 1, 2025Updated 3 months ago
- Analysing epidemic trends using AutoML approaches.☆19Apr 23, 2021Updated 4 years ago
- A cookbook of epidemiological models☆13Mar 1, 2019Updated 7 years ago
- ☆29Jun 16, 2025Updated 8 months ago
- Compute and visualise incidence (reworking of the original incidence package)☆17Updated this week
- ᚩ A DSL for describing and solving differential equations in R☆106Jan 15, 2026Updated last month
- Applied category theory applied to epidemiological models☆12Aug 7, 2024Updated last year
- Excess deaths due to COVID-19 pandemic in 2020☆11Jan 27, 2022Updated 4 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- Estimate epidemiological delay distributions with brms☆15Jan 16, 2026Updated last month
- Source files for building the IDM EMOD disease transmission model.☆105Updated this week
- Grouped dates in R☆20Updated this week
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 4 months ago
- SEIR transmission model of COVID-19. Documentation at:☆51Feb 15, 2024Updated 2 years ago
- Helper functions for using mgcv☆12Oct 10, 2019Updated 6 years ago
- A tutorial on time series regression in environmental epidemiology☆11Apr 15, 2025Updated 10 months ago
- ☆27Feb 25, 2021Updated 5 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆23Updated this week
- Infectious disease model library and utilities☆15Sep 2, 2022Updated 3 years ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆17Feb 13, 2025Updated last year
- Source code for the EpiEstim app.☆35Aug 7, 2025Updated 6 months ago
- ☆10Feb 9, 2026Updated 3 weeks ago
- Create Contact Matrices from Population Data☆20Feb 24, 2026Updated last week
- R package for scalable Bayesian disease mapping models for high-dimensional data☆17Sep 16, 2025Updated 5 months ago
- Monte-Carlo State Space Models☆19Jul 1, 2024Updated last year
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Sep 1, 2025Updated 6 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17May 9, 2024Updated last year
- The malaria model☆21Feb 18, 2026Updated 2 weeks ago
- Bayesian inference for dynamical models of biological systems in R☆17Nov 16, 2022Updated 3 years ago
- ☆10Sep 30, 2025Updated 5 months ago
- Workshop on hhh4 and the endemic-epidemic framework☆18Oct 13, 2022Updated 3 years ago
- A simulator of malaria epidemiology and control☆84Feb 25, 2026Updated last week
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- Iterate multiple realisations of stochastic models☆20Aug 15, 2025Updated 6 months ago
- A framework for data-driven stochastic disease spread simulations☆36Updated this week
- CRAN Task View: Epidemiology☆23Feb 18, 2026Updated 2 weeks ago
- ☆13Updated this week
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- Fit multievent capture-recapture models in R (maximum-likelihood), Nimble and JAGS (Bayesian)☆15Aug 7, 2020Updated 5 years ago