mlunacek / rmacc_pandas_2019Links
☆10Updated 6 years ago
Alternatives and similar repositories for rmacc_pandas_2019
Users that are interested in rmacc_pandas_2019 are comparing it to the libraries listed below
Sorting:
- Example job submission scripts for HPC systems (PBS and SLURM)☆45Updated 9 years ago
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆43Updated 7 months ago
- a modeling environment tailored to parameter estimation in dynamical systems☆64Updated 6 months ago
- Docker images for Chaste☆12Updated last week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated last month
- High-performance sensitivity analysis for large ordinary differential equation models☆129Updated this week
- ☆15Updated 5 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- Modeling toolkit for biochemical simulation☆82Updated last year
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- Standard reaction Gibbs energy estimation for biochemical reactions☆19Updated 7 years ago
- A collection of various resources, examples, and executables for the general NLR HPC user community's benefit. Use the following website …☆144Updated this week
- Increasingly complete example bioinformatics workflow☆18Updated 3 years ago
- A brief introduction to the engaging cluster for the NSE and PSFC groups. Assorted recipes and gists.☆18Updated 4 years ago
- Constraint-Based Reconstruction and EXascale Analysis☆45Updated last year
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last month
- python Parameter EStimation TOolbox☆266Updated last week
- A stochastic simulation framework in Julia.☆47Updated 9 months ago
- MathIOmica is a Mathematica package for omics data analyses☆12Updated 2 years ago
- Simulate microbial community batch culture experiments.☆43Updated last year
- Python utilities for SBML☆41Updated last week
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆27Updated 5 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- Gillespie Stochastic Simulation Algorithm☆14Updated 12 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Generate NSF Collaborators and Other Affiliations Information from your publications☆28Updated 5 years ago
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆101Updated 3 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Introduction to Biophysics, requires one semester of calculus-based Physics.☆28Updated 2 years ago
- Data-Driven Constraint-based analysis☆12Updated 3 years ago