Alternatives and similar repositories for rmacc_pandas_2019

Users that are interested in rmacc_pandas_2019 are comparing it to the libraries listed below

• jdherman / hpc-submission-scripts
  Example job submission scripts for HPC systems (PBS and SLURM)
  ☆45Updated 8 years ago
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆60Updated last week
• LCSB-BioCore / COBREXA.jl
  Constraint-Based Reconstruction and EXascale Analysis
  ☆44Updated last year
• alanderos91 / BioSimulator.jl
  A stochastic simulation framework in Julia.
  ☆47Updated 6 months ago
• johnbarton / ACE
  Fast and flexible code for solving the inverse Ising/Potts inference problem
  ☆27Updated 2 years ago
• AMICI-dev / AMICI
  High-performance sensitivity analysis for large ordinary differential equation models
  ☆127Updated last week
• NREL / HPC
  A collection of various resources, examples, and executables for the general NREL HPC user community's benefit. Use the following website…
  ☆129Updated 3 weeks ago
• SystemsBioinformatics / stochpy
  StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
  ☆42Updated 4 months ago
• opencobra / COBRA.jl
  High-level, high-performance, constraint-based reconstruction and analysis in Julia
  ☆62Updated 2 years ago
• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆22Updated 8 months ago
• Data2Dynamics / d2d
  a modeling environment tailored to parameter estimation in dynamical systems
  ☆62Updated 3 months ago
• Tchanders / InformationMeasures.jl
  Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.
  ☆67Updated 2 years ago
• WeitzGroup / analyzing_microbiome_timeseries
  ☆15Updated 5 years ago
• Ohjeah / sparsereg
  a collection of modern sparse (regularized) linear regression algorithms.
  ☆65Updated 5 years ago
• ElisabethRoesch / Perspective_Julia_for_Biologists
  Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I
  ☆101Updated 3 years ago
• Emergent-Behaviors-in-Biology / community-simulator
  Simulate microbial community batch culture experiments.
  ☆42Updated 11 months ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated last year
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• ICB-DCM / pyPESTO
  python Parameter EStimation TOolbox
  ☆262Updated this week
• mglerner / IntroToBiophysics
  Introduction to Biophysics, requires one semester of calculus-based Physics.
  ☆28Updated last year
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 2 years ago
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆79Updated 9 months ago
• liuyxpp / mpltex
  A python package for producing publication quality images using matplotlib.
  ☆102Updated 5 years ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated this week
• NIH-HPC / python-in-hpc
  Materials for a Python in HPC class
  ☆34Updated 5 years ago
• aolney / nsf-coa
  Generate NSF Collaborators and Other Affiliations Information from your publications
  ☆28Updated 5 years ago
• tanhevg / GpABC.jl
  ☆57Updated 5 months ago
• quantumbrake / cayenne
  Python package for stochastic simulations
  ☆18Updated this week
• brentp / slurmpy
  submit jobs to slurm with quick-and-dirty python
  ☆94Updated 2 years ago
• equadratures / equadratures
  ☆100Updated 2 weeks ago