mlunacek / rmacc_pandas_2019Links
☆10Updated 6 years ago
Alternatives and similar repositories for rmacc_pandas_2019
Users that are interested in rmacc_pandas_2019 are comparing it to the libraries listed below
Sorting:
- Example job submission scripts for HPC systems (PBS and SLURM)☆45Updated 8 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 7 months ago
- A collection of various resources, examples, and executables for the general NREL HPC user community's benefit. Use the following website…☆129Updated last week
- High-performance sensitivity analysis for large ordinary differential equation models☆125Updated last week
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- A stochastic simulation framework in Julia.☆47Updated 5 months ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated this week
- Generate NSF Collaborators and Other Affiliations Information from your publications☆28Updated 5 years ago
- python Parameter EStimation TOolbox☆261Updated last week
- Constraint-Based Reconstruction and EXascale Analysis☆44Updated 11 months ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆27Updated 2 years ago
- Standard reaction Gibbs energy estimation for biochemical reactions☆18Updated 6 years ago
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆100Updated 2 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last month
- ☆15Updated 5 years ago
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆42Updated 3 months ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆62Updated 2 years ago
- Simulate microbial community batch culture experiments.☆42Updated 11 months ago
- Tutorial Notebooks of BioJulia☆37Updated 6 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- The carbfix.dat thermodynamic database for PHREEQC☆19Updated 2 months ago
- Dynamical systems modeling in Julia with 🐜 & 🐟☆35Updated 3 years ago
- GPU-accelerated multicellular modelling framework☆66Updated 5 months ago
- Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.☆67Updated 2 years ago
- Gillespie Stochastic Simulation Algorithm☆14Updated 12 years ago
- ☆57Updated 4 months ago
- Data-Driven Constraint-based analysis☆12Updated 2 years ago
- Modeling toolkit for biochemical simulation☆79Updated 8 months ago
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Updated 2 years ago
- Model selection for PEtab☆13Updated last month