Clinical-Genomics / scoutLinks
VCF visualization interface
☆175Updated last week
Alternatives and similar repositories for scout
Users that are interested in scout are comparing it to the libraries listed below
Sorting:
- ABRA2☆95Updated 3 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated 2 weeks ago
- The nimble & robust variant annotator☆188Updated last year
- A tool set for short variant discovery in genetic sequence data.☆203Updated 4 years ago
- Structural variation and indel detection by local assembly☆250Updated 3 months ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- VarDict☆201Updated last year
- Workflows for germline short variant discovery with GATK4☆139Updated 4 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆208Updated 4 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Annotation and Ranking of Structural Variation☆276Updated 2 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆174Updated last year
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- ☆82Updated 7 years ago
- A structural variation pipeline for short-read sequencing☆199Updated last week
- ☆122Updated 4 months ago
- Read visualizer for structural variants☆84Updated 7 years ago
- A tool for estimating repeat sizes☆200Updated last year
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Updated 4 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆232Updated 3 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated 3 weeks ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆131Updated 2 months ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆144Updated 5 months ago