Alternatives and similar repositories for fiji.github.io

Users that are interested in fiji.github.io are comparing it to the libraries listed below

• ome / openmicroscopy
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …
  ☆215Updated last week
• ome / bioformats
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy E…
  ☆412Updated last week
• imagej / tutorials
  ImageJ2 programming examples
  ☆194Updated 2 years ago
• ilastik / ilastik
  ilastik-shell, applets, and workflows to string them together.
  ☆388Updated last week
• scifio / scifio
  SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so d…
  ☆95Updated last year
• imagej / ImageJA
  [OBSOLETE] Please use https://github.com/imagej/ImageJ instead.
  ☆79Updated 4 years ago
• fiji / cookbook
  Plugins collated for the Fiji Cookbook
  ☆26Updated 3 years ago
• imagej / imagej-ops
  ImageJ Ops: "Write once, run anywhere" image processing
  ☆92Updated last year
• ClearVolume / clearvolume
  ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …
  ☆46Updated 11 months ago
• imjoy-team / ImJoy
  ImJoy: Deep Learning Made Easy!
  ☆190Updated 2 years ago
• fiji / Trainable_Segmentation
  Fiji library to perform image segmentation based on the Weka learning schemes
  ☆121Updated last year
• scenerygraphics / sciview
  sciview is a tool for visualization and interaction with ND image and mesh data
  ☆72Updated this week
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆80Updated 7 years ago
• JaneliaSciComp / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆78Updated 3 months ago
• imagej / imagej.github.io
  The ImageJ wiki
  ☆28Updated last week
• clij / clij
  CLIJ is deprecated. Visit CLIJ2
  ☆56Updated 4 years ago
• fiji / fiji
  A "batteries-included" distribution of ImageJ
  ☆923Updated last month
• imagej / imagej-scripting
  ImageJ-specific applications of the SciJava script languages
  ☆27Updated 3 months ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆59Updated 4 years ago
• CellProfiler / CellProfiler-Analyst
  Open-source software for exploring and analyzing large, high-dimensional image-derived data.
  ☆166Updated 6 months ago
• cmongis / imagejfx
  ImageJ FX is new user inferface for ImageJ
  ☆27Updated 6 years ago
• knossos-project / knossos
  KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…
  ☆77Updated 2 months ago
• catmaid / CATMAID
  Collaborative Annotation Toolkit for Massive Amounts of Image Data
  ☆197Updated last week
• clij / clij2
  GPU-accelerated image processing for everyone
  ☆55Updated last year
• fiji / microscope-image-quality
  TensorFlow-based classifier for microscope image focus quality.
  ☆18Updated 3 years ago
• ijpb / MorphoLibJ
  Collection of mathematical morphology methods and plugins for ImageJ
  ☆113Updated 2 weeks ago
• usnistgov / MIST
  Microscopy Image Stitching Tool
  ☆160Updated 5 months ago
• scalableminds / webknossos
  Visualize, share and annotate your large 3D images online
  ☆164Updated last week
• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆93Updated last year