Alternatives and similar repositories for HEIP

Users that are interested in HEIP are comparing it to the libraries listed below

• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆57Updated 3 months ago
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆79Updated last month
• jnkather / DeepHistology
  A pan-cancer platform for mutation prediction from routine histology
  ☆69Updated 4 years ago
• fuscc-deep-path / sc_MTOP
  sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…
  ☆44Updated 8 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆37Updated 2 years ago
• spatkar94 / HistoTME
  Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)
  ☆26Updated 2 months ago
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆52Updated 4 years ago
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆79Updated 11 months ago
• AIRMEC / HECTOR
  Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.
  ☆44Updated last year
• AstroPathJHU / AstroPathPipeline
  The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …
  ☆19Updated 9 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆63Updated last year
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆28Updated last month
• instanseg / instanseg
  ☆208Updated this week
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆126Updated 6 months ago
• SydneyBioX / GHIST
  ☆63Updated 4 months ago
• ashleylk / CODA
  version 1 scripts for CODA
  ☆59Updated last year
• huangzhii / IMPRESS
  ☆20Updated 3 years ago
• ruitian-olivia / IGI-DL
  Code for ST_IGI package
  ☆34Updated 6 months ago
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆37Updated 11 months ago
• gerstung-lab / PC-CHiP
  Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
  ☆77Updated 5 years ago
• rendeirolab / LazySlide
  Accessible and interoperable whole slide image analysis
  ☆175Updated 2 weeks ago
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆114Updated last year
• AIRMEC / im4MEC
  Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…
  ☆52Updated last year
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated 2 months ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆83Updated last year
• maxpmx / HisToGene
  PyTorch implementation of HisToGene
  ☆52Updated 4 years ago
• SBU-BMI / u24_lymphocyte
  ☆32Updated 5 years ago
• okunator / cellseg_gsontools
  Feature extraction from GEOJson nuclei and tissue segmentation maps
  ☆16Updated 7 months ago
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆140Updated 4 years ago