mpetri / FM-Index
FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental results.
☆104Updated 10 years ago
Alternatives and similar repositories for FM-Index:
Users that are interested in FM-Index are comparing it to the libraries listed below
- An optimal space run-length Burrows-Wheeler transform full-text index☆61Updated last year
- Parallel Suffix Array, LCP Array, and Suffix Tree Construction☆48Updated 5 years ago
- Dynamic succinct/compressed data structures☆112Updated 8 months ago
- Succinct Data Structure Library 3.0☆94Updated 5 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆83Updated last year
- Relative data structures based on the BWT☆12Updated 6 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 2 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆63Updated 8 months ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆15Updated 6 years ago
- Compact Tree Representation☆16Updated 7 years ago
- 🔶 Compressed bitvector/container supporting efficient random access and rank queries☆43Updated 5 months ago
- Succinct Data Structure Library☆105Updated 11 years ago
- Compact Data Structures Library☆98Updated 2 years ago
- Compact Data Structures Library☆124Updated 10 years ago
- Parallel Wavelet Tree and Wavelet Matrix Construction☆26Updated last year
- C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings☆153Updated 6 months ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆49Updated 3 years ago
- BEETL☆97Updated last year
- A compressed, associative, exact, and weighted dictionary for k-mers.☆85Updated 4 months ago
- BWT-based index for graphs☆70Updated 3 months ago
- TU DOrtmund lossless COMPression framework☆17Updated 5 months ago
- Parallel Lightweight Suffix Array Algorithm.☆18Updated 8 years ago
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆25Updated last year
- C++ Library implementing Compressed String Dictionaries☆46Updated 2 years ago
- Bloom-filter based minimal perfect hash function library☆254Updated last year
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- R-Index-F Library for Pattern Matching☆13Updated 6 months ago
- Ultra fast MSD radix sorter☆11Updated 4 years ago