Gaussian processes on graphs and lattices in Stan.
☆19Mar 17, 2025Updated 11 months ago
Alternatives and similar repositories for gptools
Users that are interested in gptools are comparing it to the libraries listed below
Sorting:
- Compile Stan models to WebAssembly.☆15May 14, 2023Updated 2 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Nov 11, 2025Updated 3 months ago
- A sklearn style interface to Stan regression models☆26Oct 14, 2024Updated last year
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Aug 31, 2022Updated 3 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11Apr 8, 2025Updated 10 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- ☆25Nov 2, 2022Updated 3 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 4 months ago
- "Swappable Module" compiler for the Stan probabilistic programming language.☆13Aug 18, 2023Updated 2 years ago
- Estimate Parameters for Arbitrary R Functions using 'Stan'☆27Jan 25, 2026Updated last month
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆13Aug 11, 2022Updated 3 years ago
- Short course on parametric survival analysis☆15Nov 22, 2024Updated last year
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13May 18, 2022Updated 3 years ago
- An R package for Bayes Linear emulation and history matching.☆18Dec 1, 2025Updated 3 months ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- Tools for automatically generating local sensitivity measures in Stan.☆37Dec 2, 2020Updated 5 years ago
- Automatic forecasting and Bayesian modeling for time series with Stan☆46Jun 5, 2025Updated 9 months ago
- Tools for building predictive models in epidemiology.☆16Sep 19, 2025Updated 5 months ago
- Tool-set to support Bayesian evidence synthesis in R☆25Feb 26, 2026Updated last week
- ☆15Jan 10, 2021Updated 5 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- Nowcasting by Bayesian Smoothing☆18May 14, 2025Updated 9 months ago
- Workshop on hhh4 and the endemic-epidemic framework☆18Oct 13, 2022Updated 3 years ago
- LogDensityProblems implementation for Stan models☆18Jan 2, 2026Updated 2 months ago
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆21Feb 18, 2026Updated 2 weeks ago
- ☆10Sep 30, 2025Updated 5 months ago
- CRAN Task View: Epidemiology☆23Feb 18, 2026Updated 2 weeks ago
- R package to run Bayesian MMRMs using {brms}☆23Jul 31, 2025Updated 7 months ago
- ☆62Feb 13, 2026Updated 2 weeks ago
- Examples on INLA within MCMC☆12May 15, 2017Updated 8 years ago
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆11Oct 30, 2023Updated 2 years ago
- Code for utilising VAE as means of doing exact MCMC inference in complex high-dimensional space☆14Jun 20, 2023Updated 2 years ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆11May 4, 2021Updated 4 years ago
- An introduction to Multilevel Modeling and Poststratification (MRP) and some of its extensions.☆41May 26, 2022Updated 3 years ago
- Estimating time trees from very large phylogenies☆28Jul 21, 2024Updated last year
- Reimplementation of Stan algorithms☆19Jan 11, 2022Updated 4 years ago