Alternatives and similar repositories for MicroscopyNodes:

Users that are interested in MicroscopyNodes are comparing it to the libraries listed below

• oanegros / Blender_for_Biologists_2023
  ☆38Updated 8 months ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆76Updated last month
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆83Updated this week
• haesleinhuepf / devbio-napari
  ☆49Updated 6 months ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆86Updated this week
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆43Updated last month
• napari / napari-animation
  A napari plugin for making animations
  ☆84Updated 7 months ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 2 weeks ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆109Updated last week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆44Updated last week
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆36Updated 2 weeks ago
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated 2 months ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆56Updated 2 weeks ago
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆65Updated 2 weeks ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 4 years ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆74Updated this week
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆62Updated last year
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆81Updated this week
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆62Updated 3 weeks ago
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆62Updated this week
• peng-lab / BaSiCPy
  ☆71Updated last month
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 5 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 5 months ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆149Updated last week
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆31Updated 3 years ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆39Updated 4 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 7 months ago
• royerlab / inTRACKtive
  Interactive visualization and sharing of cell tracking data in the browser
  ☆23Updated 3 weeks ago