dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
☆77Feb 14, 2026Updated 7 months ago
Alternatives and similar repositories for dmriprep
Users that are interested in dmriprep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆170Sep 9, 2026Updated 2 weeks ago
- Preprocessing of diffusion MRI☆190Updated this week
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆379Updated this week
- Flexible DICOM conversion into structured directory layouts☆284Updated this week
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆118Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- MOVED TO https://github.com/nipreps/dmriprep☆17Dec 26, 2022Updated 3 years ago
- Preprocessing of arterial spin labeling (ASL) data☆64Sep 1, 2026Updated 3 weeks ago
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆755Updated this week
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆63Sep 23, 2024Updated 2 years ago
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆96Jul 31, 2025Updated last year
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆119Sep 10, 2026Updated last week
- Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)☆25Apr 25, 2021Updated 5 years ago
- Microstructure Diffusion Toolbox☆60Mar 4, 2024Updated 2 years ago
- The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets☆136Nov 8, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Reconstruction of preprocessed q-space images (dMRI)☆25Updated this week
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆46Updated this week
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Mar 17, 2021Updated 5 years ago
- A repository for notebooks associated with FMRIPREP☆17Oct 25, 2018Updated 7 years ago
- BIDS app wrapping recon-all from FreeSurfer☆47Jul 24, 2026Updated last month
- A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners☆56May 12, 2025Updated last year
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆354Sep 16, 2026Updated last week
- micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read…☆121Aug 10, 2026Updated last month
- Open-source eddy-current and head-motion correction for dMRI.☆20Jan 27, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python tools for querying and manipulating BIDS datasets.☆268Updated this week
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆226Updated this week
- preprocessing scripts for diffusion imaging☆10Sep 6, 2019Updated 7 years ago
- ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data☆132Updated this week
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆75Dec 27, 2025Updated 8 months ago
- Create realistic digital phantoms in diffusion MRI.☆40Jul 4, 2023Updated 3 years ago
- R package for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphom…☆77Updated this week
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆56Feb 11, 2026Updated 7 months ago
- Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-d…☆15Oct 20, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PyTorch implementation of FastSurferCNN☆636Updated this week
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆100Sep 15, 2026Updated last week
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆252Jun 9, 2026Updated 3 months ago
- Processing pipelines for the HCP☆655Sep 9, 2026Updated 2 weeks ago
- Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…☆55Apr 26, 2026Updated 4 months ago
- BigBrainWarp☆28Jun 13, 2025Updated last year
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆121Jul 15, 2026Updated 2 months ago