dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
☆73Feb 14, 2026Updated last month
Alternatives and similar repositories for dmriprep
Users that are interested in dmriprep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆162Mar 16, 2026Updated last week
- Preprocessing of diffusion MRI☆178Mar 17, 2026Updated last week
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆351Jan 28, 2026Updated last month
- Flexible DICOM conversion into structured directory layouts☆275Jan 22, 2026Updated 2 months ago
- Preprocessing of arterial spin labeling (ASL) data☆54Updated this week
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆109Mar 16, 2026Updated last week
- MOVED TO https://github.com/nipreps/dmriprep☆17Dec 26, 2022Updated 3 years ago
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆63Sep 23, 2024Updated last year
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆721Mar 10, 2026Updated 2 weeks ago
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆85Jul 31, 2025Updated 7 months ago
- Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)☆24Apr 25, 2021Updated 4 years ago
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆108Updated this week
- Microstructure Diffusion Toolbox☆60Mar 4, 2024Updated 2 years ago
- Reconstruction of preprocessed q-space images (dMRI)☆21Mar 17, 2026Updated last week
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆44Mar 16, 2026Updated last week
- The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets☆131Nov 8, 2022Updated 3 years ago
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Mar 17, 2021Updated 5 years ago
- A repository for notebooks associated with FMRIPREP☆17Oct 25, 2018Updated 7 years ago
- BIDS app wrapping recon-all from FreeSurfer☆45Mar 16, 2026Updated last week
- A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners☆53May 12, 2025Updated 10 months ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆342Updated this week
- Open-source eddy-current and head-motion correction for dMRI.☆20Jan 27, 2025Updated last year
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆213Updated this week
- preprocessing scripts for diffusion imaging☆10Sep 6, 2019Updated 6 years ago
- Python tools for querying and manipulating BIDS datasets.☆256Mar 16, 2026Updated last week
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆75Dec 27, 2025Updated 2 months ago
- Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-d…☆15Oct 20, 2021Updated 4 years ago
- micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read…☆117Updated this week
- Create realistic digital phantoms in diffusion MRI.☆41Jul 4, 2023Updated 2 years ago
- niimath - a clone of fslmaths. Try the live demo:☆75Updated this week
- PyTorch implementation of FastSurferCNN☆590Mar 18, 2026Updated last week
- R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphom…☆74Feb 18, 2026Updated last month
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆54Feb 11, 2026Updated last month
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆96Mar 13, 2026Updated last week
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆243Feb 9, 2026Updated last month
- BigBrainWarp☆27Jun 13, 2025Updated 9 months ago
- Processing pipelines for the HCP☆636Updated this week
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆194Mar 6, 2026Updated 2 weeks ago
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆118Dec 4, 2024Updated last year